Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3689 ATGGACGAAGATTTGTTGAAGCGTAACACCGATTGCGTTTATTTCTTGGCTTCACCCCTCACTTGCAAGAAGGGTGCAGAGTGTGAGTATAGGCACCATGAGATTGCAAGGCTTAACCCGAGGGATTGTTGGTACTGGTTATCGGGGAATTGTCTTAATCCCACTTGTGCTTTTAGACACCCTCCATTGGATGGGCACACTGGAGTACCATCTGAACCTGCGCAATCTTCGTTACCTGCAACTGCAAATAAGACAATGGTTCCCTGTTATTTCTTCTTCAATGGGTTTTGCAATAAAGGTAACAGATGCTCATTTTTGCACGGGAATGATGCTAGCTTGCTCGCTGTAAAGCCTTTGAAGAATGACAATGTAAAGCCTCTGAAGAATGACAATGGAAACATTAATGCACTCAACAACTTAGAAAACAAAACTTCATCGGGAAATAAAACAGTTGCATCAAAACCAAGTGAAACACATTTTGACCAACCTTTATCTTCTCCAAAAGCTTTGTCTGATATTAAACTTCAGCCTAAGGAAGATCTTCAGCTGCCATTACCCAAAAATGTTAAACAGAAAGATGATTGCTTGGAATTATCTGCTTTTGACCATAAAGAAGCTCCCTTGACCCGGTCAGACTCTCCGTCACCAGATGACAGCTTTGCTCATAACATGTCTCATTCAAGTACTGAGCAGAGTTCAGAGGAGCAGCAAGACAGTCATGTAGAGCCTGAGGAGCGATGGGAATCCTCGCCTGGATTTGATGTTCTTGTTCATGATGAATCTGGGAACCTGGGTTATGAGAATGATTCTGAATATTTGCCAGTGCTTGATATGGATGACCATGAACTGAATGAGCAATACTTGGGGTATGAACTTAAAAATACAGATGAGTACAATACCATGTGCTCGGACGCTGATATTCTGTATGAACAGGGAACATGTGATGATTACAGATGTTTTGATAGAGATTTTACTAGTGCCAGTGAAAGGAAAGTTTGTGGTTATTCCAGAGAGATAGTTTTAGATTCTATGTTTTCCAGGAAAAGGGTTCGGATGTCAGCTGCTGAGATGGCTGCTTATGACTCTGACTTAGATCTACGTGACCATCTGAGAAGACGCAGAGGGGTCAATGGCCCCCCTGTCACAGGTTTCGTAAGAAGACATGAGTCGTCTTCTTTAATGGTTCGAAACCGGGAAAGGCATCAAAGGCAAGGCATTGGTCAGCAGCAAAACATAAGATTAACATCACAATTAGGATTTGGTTCAATCAGAGAGGTTGAAGATCTTTCAATTGCTAACAAGCAGAGATTATTTAGGCCTTCCCAACAAAATAGGCCAAGAAATCTTTATAGAGAAAAACCAGCTAAACAGCCATTTCATTCTTCTAAAAAAAAAGTATCCAGGAAACCAGTTGTGAAGCAACAGAACTTTATCCAGGAATCTGGTACATTTTCAGGGCCCAAGACTCTTGCAGAAATAAAAGAAGAGAAGATGAAGAAAGCTGGTCAAAGTTCACAATGTGAAAGCTCCTCAGCTGGTTTTCAGGATCCCAAGCCTCTGCATGAAATTCTTAAAGACAGAAGGACCGTGGATTGA 1596 0.416 MDEDLLKRNTDCVYFLASPLTCKKGAECEYRHHEIARLNPRDCWYWLSGNCLNPTCAFRHPPLDGHTGVPSEPAQSSLPATANKTMVPCYFFFNGFCNKGNRCSFLHGNDASLLAVKPLKNDNVKPLKNDNGNINALNNLENKTSSGNKTVASKPSETHFDQPLSSPKALSDIKLQPKEDLQLPLPKNVKQKDDCLELSAFDHKEAPLTRSDSPSPDDSFAHNMSHSSTEQSSEEQQDSHVEPEERWESSPGFDVLVHDESGNLGYENDSEYLPVLDMDDHELNEQYLGYELKNTDEYNTMCSDADILYEQGTCDDYRCFDRDFTSASERKVCGYSREIVLDSMFSRKRVRMSAAEMAAYDSDLDLRDHLRRRRGVNGPPVTGFVRRHESSSLMVRNRERHQRQGIGQQQNIRLTSQLGFGSIREVEDLSIANKQRLFRPSQQNRPRNLYREKPAKQPFHSSKKKVSRKPVVKQQNFIQESGTFSGPKTLAEIKEEKMKKAGQSSQCESSSAGFQDPKPLHEILKDRRTVD* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3689 531 MobiDBLite consensus disorder prediction 140 173 - -
Tpr4g3689 531 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 529 - -
Tpr4g3689 531 MobiDBLite consensus disorder prediction 495 531 - -
Tpr4g3689 531 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Tpr4g3689 531 MobiDBLite consensus disorder prediction 212 232 - -
Tpr4g3689 531 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Tpr4g3689 531 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Tpr4g3689 531 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Tpr4g3689 531 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Tpr4g3689 531 SUPERFAMILY CCCH zinc finger 83 108 IPR036855 GO:0046872
Tpr4g3689 531 MobiDBLite consensus disorder prediction 233 251 - -
Tpr4g3689 531 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Tpr4g3689 531 MobiDBLite consensus disorder prediction 203 251 - -
Tpr4g3689 531 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 1 529 - -
Tpr4g3689 531 Gene3D - 3 63 - -
Tpr4g3689 531 Gene3D - 75 149 - -
Tpr4g3689 531 MobiDBLite consensus disorder prediction 140 165 - -
Tpr4g3689 531 Pfam Zinc-finger containing family 7 63 IPR041686 -
Tpr4g3689 531 MobiDBLite consensus disorder prediction 436 472 - -
Tpr4g3689 531 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 108 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3689 Tpr-Chr4 42814780 42818358 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr4g3689 zf-CCCH_3 1.9e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3689 - - aprc:113847503 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3689 4 42814780 42818358 Tpr4g3689 4 42814780 42818358 ECH