Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3681 ATGGCTTGGTTTTCTGATTCAACTACTCACAAACAATCTCGTCCCTCTCAACCCATTTACGTTCCTCAATTCCGTTCCAACAACAACATTCATCAACAACAACAACCTTACAACAACAACAACAACAACAACAATCGAACCCATTTTCCATCAACCAATGATTCACCTCACTTCACTTTCAATCGTTCAACTCCTCGACCACGTGGTCGAGGCGGTTACGGTTTCGGCCCTCCACGTCATCATCAACAACAACAACAACAACAACCACGGAGCTATGATCCTTCTTACCGGAACAACCGGTCACCGTTTGAAACTAACGCTGAACCAGAAAACGGTTCAAATGGTTTAAACGGCGTCGTTGCGAATTTTGAAGCCTACGATTCAATCCCTGTTGAAGCGACTGGAGAGAATGTTCCTCCTCCGGTGAATGTGTTCGCTGAAACGGAACTTCATGATGATTTGAAGAACAACATTGAACGATGTAAGTATGTGAAACCTACTCCGGTTCAGCGTTACGCGATCCCCATTGCCGTTGCTGGTAGAGACCTTATGGCTTGTGCTCAAACTGGTTCTGGTAAAACGGCGGCGTTTTGTTTCCCGATCATATCTGGGATCATGAAGGAACGTTTAGCTTCTGAGTTTTCTGATATGAAACTTTGCGGTGGTTCCGATGTTGCTTTTCCTACTGCACTAATCTTGTCTCCAACTAGGGAGTTATCATGCCAGATATATGCTGAAGCGACAAAGTTTGCATATCAAACAGGAGTGAAGATTGCGGTTTGTTATGGTGGTGCTCCTATTGGTCAACAGTTGAGGGTTTTGGAACGAGGTGTTGATATTTTGGTTGCTACTCCTGGGCGTTTGGTTGATTTGATTGAAAGAGAAAGAATTTCTTTGAAGAAGATTAAGTATCTTGCTTTGGATGAGGCTGATCGGATGCTCGACATGGGTTTTGAGCATCAGATTCGGAATATTGTTCAGCAGATGCATATGCCTCCTCCGGGTGATAGACAGACATTGCTTTTCAGTGCTACATTTCCTGATAATATACAGAAACTTGCATCTGATTTTCTATCAAACTATGTGTTCCTTGCTGTTGGAAGGGTTGGTTCAAGCACTGAACTGATTGTACAGAAAGTTGAATCTGTACAGGATATGGAGAAAAGAAATCGTCTTGTCGATCTTCTCCAACACAATGTAGTTAATGGGAAGCTTGCTTTAACTCTTGTATTTGTTGAAACAAAGAAAGGAGCTGATGCTTTAGAACACTGGTTGTGCAGAAGTGGTTTCCCAGCTATTGCAATACATGGTGATAAGGTTCAAATGGAGAGGGAACGAGCTTTGAGATCTTTCAAACGTGGTCTGACTCCAATAATGGTTGCGACTGACGTTGCTTCCCGAGGATTGGATATCCCTCACGTGGCTCATGTTATTAACTTTGACTTACCTAGAGATATAGATGACTATGTACATAGAATTGGTAGAACAGGCCGTGCTGGTCAAACTGGTTTAGCAACAGCTTTCTTCTGCAGCAAGAACCTGCCTATTGCAAAATCTCTTGTAGGTCTTTTACAGGAAGCAAAACAAGAAGTTCCTTCTTGGCTTGTCCAATGTTCTGAGAGTGTCGTACCAGGTGGACGCAACAGCGTTGGATCTCAACGGTCGCCCTGGAGAGGCAATTATGGAGGACGCGATTTCCGGACTGCAACTGAACCTGGGATGGAGAGTTACAACAACTATAACAGTAGTTACAGCAATTATGGTGATAATGGTTTTCATAATGTTCCTGAACAGGTGGAGAATTACAACTACAGCAGTACCTACAGCAATGGAGACCATGCTGCTAACACTTATACTGATGCTTCTGTAGAGGTCCAAAACAACAACTGCTCTTTTGAAAGCACTAATACAGGGTTTGCCGGTGGTTATGGTTACACTGATGCTGGTTTATTAGAAGGTAGTAATGGTCAAAATGGGCCATGTGGTTATGCATCTGTTGTGCCCACTGGATGGGACTAA 2019 0.4334 MAWFSDSTTHKQSRPSQPIYVPQFRSNNNIHQQQQPYNNNNNNNNRTHFPSTNDSPHFTFNRSTPRPRGRGGYGFGPPRHHQQQQQQQPRSYDPSYRNNRSPFETNAEPENGSNGLNGVVANFEAYDSIPVEATGENVPPPVNVFAETELHDDLKNNIERCKYVKPTPVQRYAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGIMKERLASEFSDMKLCGGSDVAFPTALILSPTRELSCQIYAEATKFAYQTGVKIAVCYGGAPIGQQLRVLERGVDILVATPGRLVDLIERERISLKKIKYLALDEADRMLDMGFEHQIRNIVQQMHMPPPGDRQTLLFSATFPDNIQKLASDFLSNYVFLAVGRVGSSTELIVQKVESVQDMEKRNRLVDLLQHNVVNGKLALTLVFVETKKGADALEHWLCRSGFPAIAIHGDKVQMERERALRSFKRGLTPIMVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGQTGLATAFFCSKNLPIAKSLVGLLQEAKQEVPSWLVQCSESVVPGGRNSVGSQRSPWRGNYGGRDFRTATEPGMESYNNYNSSYSNYGDNGFHNVPEQVENYNYSSTYSNGDHAANTYTDASVEVQNNNCSFESTNTGFAGGYGYTDAGLLEGSNGQNGPCGYASVVPTGWD* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3681 672 Pfam DEAD/DEAH box helicase 167 353 IPR011545 GO:0003676|GO:0005524
Tpr4g3681 672 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 399 539 IPR001650 -
Tpr4g3681 672 MobiDBLite consensus disorder prediction 49 68 - -
Tpr4g3681 672 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 37-LIKE ISOFORM X1 50 580 - -
Tpr4g3681 672 MobiDBLite consensus disorder prediction 77 96 - -
Tpr4g3681 672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 515 IPR027417 -
Tpr4g3681 672 SMART ultradead3 162 379 IPR014001 -
Tpr4g3681 672 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 50 580 - -
Tpr4g3681 672 CDD DEADc_DDX3_DDX4 145 370 IPR044763 GO:0003724|GO:0005524
Tpr4g3681 672 Gene3D - 104 366 IPR027417 -
Tpr4g3681 672 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 364 IPR014001 -
Tpr4g3681 672 SMART helicmild6 419 500 IPR001650 -
Tpr4g3681 672 Gene3D - 367 541 IPR027417 -
Tpr4g3681 672 CDD SF2_C_DEAD 376 509 - -
Tpr4g3681 672 MobiDBLite consensus disorder prediction 79 96 - -
Tpr4g3681 672 Pfam Helicase conserved C-terminal domain 388 500 IPR001650 -
Tpr4g3681 672 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 143 171 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3681 Tpr-Chr4 42757324 42760920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3681 141 520 Eukaryotic Initiation Factors Gene Family AT3G19760 32.376 4.42e-60 205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3681 4 42757324 42760920 Tpr4g3681 4 42757324 42760920 ECH