Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3665 ATGTATATATTGTACATTCTATATCTCTTGCTCTGCTCTGCACAACTACTACGTTTTACCAACATGGTTCAATCGAAGAAGTTCAGAGGTGTCAGGCAGCGTCATTGGGGTTCTTGGGTTTCTGAAATAAGACACCCACTTTTGAAGAGAAGGGTGTGGCTAGGAACATTTGAAACAGCAGAGGAAGCAGCAAGAGCTTATGATCAAGCAGCAATATTAATGAGTGGTAGAAATGCCAAAACAAATTTCCCAATAACACAAACTCCTGAGGGTGATCCAAAAAGCAGTACTAGCACTGATCATGACAAACCTTCAACTTCGTCAAAAGATCTAGAAGAAATCTTACACGCTAAGCTTCGAAAATGTGGCAAATTACCATCTCCTTCAATGACTTGTTTAAGGCTTGACACAGAAAACTCTCACATTGGTGTGTGGCAAAAACGTGCTGGCAAGTGTTCTGATTCAAATTGGGTTATGACTGTTCCACTTGGAAAAAAGAAGAGTGTAACCGAAGATAGTAGCGGTAGTAGCAGTAGTAGTGTTGTGCCATCATCGGTGGTGGCAACGGAGGAGGAGATTGTGCGAGGAGAGATTGATGAAGAAGATAGAATTGCACTTCAAATGATAGAGGAACTTCTTAATGACAAGAACTGTCCTAGTCCATCAATTAACAATACTAAACAAGGAGATGATATTGATAACACTTTTTTTCTTTAA 717 0.3989 MYILYILYLLLCSAQLLRFTNMVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSSTSTDHDKPSTSSKDLEEILHAKLRKCGKLPSPSMTCLRLDTENSHIGVWQKRAGKCSDSNWVMTVPLGKKKSVTEDSSGSSSSSVVPSSVVATEEEIVRGEIDEEDRIALQMIEELLNDKNCPSPSINNTKQGDDIDNTFFL* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3665 238 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 22 225 - -
Tpr4g3665 238 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
Tpr4g3665 238 Pfam AP2 domain 27 75 IPR001471 GO:0003700|GO:0006355
Tpr4g3665 238 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Tpr4g3665 238 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 225 - -
Tpr4g3665 238 CDD AP2 26 86 IPR001471 GO:0003700|GO:0006355
Tpr4g3665 238 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Tpr4g3665 238 MobiDBLite consensus disorder prediction 95 110 - -
Tpr4g3665 238 Gene3D AP2/ERF domain 26 86 IPR036955 GO:0003700|GO:0006355
Tpr4g3665 238 MobiDBLite consensus disorder prediction 83 110 - -
Tpr4g3665 238 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Tpr4g3665 238 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3665 Tpr-Chr4 42590602 42592477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3665 22 214 AP2-EREBP Transcription Factor Family AT1G15360 63.861 2.28e-77 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr4g3665 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3665 - - gsj:114375848 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3665 4 42590602 42592477 Tpr7g0635 7 5607487 5608625 ECH
Tpr4g3665 4 42590602 42592477 Tpr1g3395 1 38281961 38282895 ECH
Tpr4g3665 4 42590602 42592477 Tpr4g3665 4 42590602 42592477 ECH