Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3636 ATGGCAACACAACCTGAAGATCCAAAGAAAGCCCTCGGTTGGGCAGCAAGAGATTCTTCTGGTCTTCTCTCCCCTTTCAATTTCTTTAGAAGAGAAACTGGTGAAAAAGATGTGGCACTCAAAATATTGTATTGTGGGATATGTCACTCAGATGTTCACATGATGAAGAACGAATGGGGCGTATCAACTTATCCACTAGTTCCTGGGCATGAGATTGTTGGTATAGTGACAAAGGTAGGAAGCAAAGTAGAAAAGTTCAAAGTTGGAGACAAAGTGGGTGTTGGCTACATGATTGATTCATGTCGATCATGTCAAAATTGTACTGAAAATCTTGAAAGTTATTGTCCCCAATTTATACCCACATGTGGTGCCGAGAACTATCGTGATGGCACCACATATGGAGGTTACTCTGACTCAATAGTTGTAGACGAGCACTTTGTGATTCATATTCCTGATGGTTTACCACTTGAAGCCGCAGCTCCTCTTCTTTGCGCTGGTATAACAGTGTATAGTCCTCTTCGATATTTTGGGCTCGACAAGCCCGGTCTACGTATAGGTGTTGTTGGTCTTGGTGGACTTGGTCACATGGCTGTTAAGTTTGCCAAAGCTTTTGGTGCTAATGTGACTGTAATTAGTACATCACCTAACAAAGAAAAGGAAGCAATAGAACACTTAGGAGCTGACTCATTTTTTATAAGTCATGACAAAGATAAAATGAAGGCTGCAAGGGGTACTTTGGATGGTATCATTGATACAGTTTCAGCTGATCATTCTGTCTCACCTCTTATTGGTTTGTTGAAGTCTCATGGAAAACTTGTAATGGTTGGTGTTCCAATCAAGCCTGTCGAGATCCATGTCTCTCATTTACTTTTGGGGAGAAAGATGGTAGCTGGAAGTAATATTGGAGGAATGAAAGAGACTCAAGAGATGATTGATTTTGCTGCTAAACATGATGTAAAACCTAGCATTGAAGTCATTCCTATGGATTATGTTAATATTGCAGTGGAGCGACTCCTCAAAGCAGATGTCAAATATCGATTTGTGATTGACATTGGAAACACTCTCAAACCAAGCTCTCAACTCTATACATCTTTAAAACGGATGAAAGAAACAAATGAAAAAGACGTGGCATTCAAAATATTGTATTGTGGGATATGTCACTCAGATCTTCACCTGATGAAAAACGAATGGGGCATGTCCAACTATCCGCTAGTACCTGGGTATGAAATTGTTGGAATAGTGACAAAGGTGGGAAGCAAAGTAGAAAAGTTCAAAGTTGGAGACAAAGTAGGTGTTGGCTACATAATTGACTCATGCCGATCTTGTCAAAATTGCACTGAAAATCTTGAAAGTTATTGTCCCCAACATATACCCACATGTGGTGCCAAGTATCGTGATGGCATCACATATGGAGGTTACTCTGACTCAATCGTTGTAGACGAGCACTTTATAGTTCATATTCCTGATGGTTTACCACTTGAAGTTGTTGCTCCTCTTCTTTGTGCTGGTATCACGGTGTATAGTCCTCTTCGATATTTTGGGCTCGACAAGCCCGGTCTACATATAGGTGTTGCTGGTCTCGGTGGACTTGGTCACATGGCTGTTAAGTTTGCCAAAGCTTTTGGTGCTAATGTGACTGTAATTAGTACATCACCTAACAAAGAAAAGGAAGCAATAGAACATTTAGGAGCTGACTCATTTTTAATAAGCCAAGACCAAGCTAAGATGCAGGCTGCAATGGGTACTTTGGATGGTATCATTGATACAGTTTCAGCTGATCATCCTCTCTTACCTCTTATTGGATTGTTGAAATCTCATGGAAAACTTGTAATGGTTGGTGCTCTAATGAAGCCTATGGAGCTCCATGTCTTTCCTTTACTTTTGGGAAGAAAGATGATAGTTGGAAGTTTTATTGGAGGAATGAAAGAGACTCAAGATATGATTGATTTTGCTGCTAAACACAATGTAAAACCTACCATTGAAGTCATTCCTATGGATTATGTTAACATTGCAATGGAGCGACTCCTCAAAGCAGATGTCAAATATCGATTTGTGATCGACATTGGGAACACTCTCAAACCAAGCTCTTAA 2091 0.4017 MATQPEDPKKALGWAARDSSGLLSPFNFFRRETGEKDVALKILYCGICHSDVHMMKNEWGVSTYPLVPGHEIVGIVTKVGSKVEKFKVGDKVGVGYMIDSCRSCQNCTENLESYCPQFIPTCGAENYRDGTTYGGYSDSIVVDEHFVIHIPDGLPLEAAAPLLCAGITVYSPLRYFGLDKPGLRIGVVGLGGLGHMAVKFAKAFGANVTVISTSPNKEKEAIEHLGADSFFISHDKDKMKAARGTLDGIIDTVSADHSVSPLIGLLKSHGKLVMVGVPIKPVEIHVSHLLLGRKMVAGSNIGGMKETQEMIDFAAKHDVKPSIEVIPMDYVNIAVERLLKADVKYRFVIDIGNTLKPSSQLYTSLKRMKETNEKDVAFKILYCGICHSDLHLMKNEWGMSNYPLVPGYEIVGIVTKVGSKVEKFKVGDKVGVGYIIDSCRSCQNCTENLESYCPQHIPTCGAKYRDGITYGGYSDSIVVDEHFIVHIPDGLPLEVVAPLLCAGITVYSPLRYFGLDKPGLHIGVAGLGGLGHMAVKFAKAFGANVTVISTSPNKEKEAIEHLGADSFLISQDQAKMQAAMGTLDGIIDTVSADHPLLPLIGLLKSHGKLVMVGALMKPMELHVFPLLLGRKMIVGSFIGGMKETQDMIDFAAKHNVKPTIEVIPMDYVNIAMERLLKADVKYRFVIDIGNTLKPSS* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3636 696 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 491 657 IPR036291 -
Tpr4g3636 696 Pfam Alcohol dehydrogenase GroES-like domain 374 486 IPR013154 -
Tpr4g3636 696 Pfam Alcohol dehydrogenase GroES-like domain 36 149 IPR013154 -
Tpr4g3636 696 PANTHER ALDEHYDE REDUCTASE 368 695 - -
Tpr4g3636 696 PANTHER ALDEHYDE REDUCTASE 4 358 - -
Tpr4g3636 696 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 4 358 - -
Tpr4g3636 696 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 368 695 - -
Tpr4g3636 696 Gene3D - 165 321 - -
Tpr4g3636 696 Gene3D - 502 658 - -
Tpr4g3636 696 SUPERFAMILY GroES-like 9 197 IPR011032 -
Tpr4g3636 696 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Tpr4g3636 696 CDD CAD1 13 350 - -
Tpr4g3636 696 SUPERFAMILY GroES-like 369 519 IPR011032 -
Tpr4g3636 696 CDD CAD1 367 687 - -
Tpr4g3636 696 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 154 320 IPR036291 -
Tpr4g3636 696 Pfam Zinc-binding dehydrogenase 529 652 IPR013149 -
Tpr4g3636 696 Pfam Zinc-binding dehydrogenase 192 315 IPR013149 -
Tpr4g3636 696 Gene3D - 366 688 - -
Tpr4g3636 696 Gene3D - 14 351 - -
Tpr4g3636 696 SMART PKS_ER_names_mod 21 349 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3636 Tpr-Chr4 42176952 42185119 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3636 369 695 Monolignol Biosynthesis Gene Families AT4G37990 67.988 7.40e-145 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3636 - K23232 sind:105165970 931.398