Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3576 ATGGAGGAGTTACTGACTGGTGTATTGTGTGGTCTGTGGAGAATGGGAAGTAACAGTGTTGAAAAGATCCCTATCAATAACAGCACTGGAGGTTCAGAAACCACTATTGAGATAAAGATCAAAACACTGGATTCACAAACCTATACCCTCAAAGTGGATAAACAGATGCCAGTCCCTGCTCTGAAAGAACAGATTGCTTCTGTAACTGGAGTGTTATCAGAACAGCAGCGCTTAATTTGCCAAGGGAAAGTTCTAAAGGACGATCAACTATTGTCTGCCTACCATGTTGAAGATGGTCACACACTCCATCTGGTTGTGAGGCATCCTGATCTGCCACCTCCAGGAAGTCTGCCCAATCATTCAGTGACTGAGCCAAACTCAAGCACAAGCCATGGTCACAGTACTCAAGTCGCTCCGGGTGTTTTCATTGAAACTTTCAATGTACCTGTTCAGGGTGATGGAGTTCCACCTGAAATAAATAGGATTGTTTCTGCTGTTCTAGGCTCTATTGCTGGACTTCCAAATTTTGCAAGTGGCGGTGAAGGGATTGTTGTCAGGGATAATGATTCCCAAGGCCTTGGAAGAACTTCAGATTCTAGTGGAATATCAGATCCGTTACGTCCAATACTTGATCAAACTGGTTTACGGAGTTTGACAGATAGATTACGGAATACTTTTGGAGTATCAGCATCAGGTTCTCTAGGGTCTTTGCAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGTCCCAGTACCTAAGTCATATGGGCCATGAATTTGATACAATTGTAAGAGAAGTCAGAGAAGGGGGGAATAATGCCCAAGCAGCTGAGGCTCGTAGTAATGAAGAAATGGGATCTGCTTCTTCACATTTGGGTTCAACACCAGCAAATCTTTCATCACCCGCATCCTTGGCAGAAGTCTTGCTTTCTACCAGACGAATGATCATTGAACAAGCTGGGGAGTGCATACTTCAACTGGCAAGACAACTGGAGAATCAATCAGATGTAACTGATGCTTCGTCGCGATCTAGCTTTCAATCTAGGGCTATGAGAACTGGAACATTGTTTTATAACCTTGGTGCATTTTTACTTGAGCTTGGTCGTACAACCATGACATTGCGTTTGGGTCAAACACCGTCTGAAGCTGTAGTCAATGGTGGACCTGCAGTTTTTATATCACCTACTGGTCCTAATCATATCATGGTTCAGCCTCTTCCTTTTCAACCTGGAGCGAGCTTTGGTGCTGTCCCTGTAGGAGCTGCACAGTCTGACTCAAGTTTAGGTTCTGGACTTGGCTCAAATTTTTTCCCAAGGCGTATCGATATACAGATAAGACGAGGCACTTCAACAACCACACCCAATGCCAATCAAGATGACCGTGGGGATACACAATCTGCTTCAGTACAAAGAAATCCAGCTGAAAGTTCTGCTAGTCAAGCAACGTCTAGGCGACCAGATGCATCTATTGCCGGAGAGCCAGCAATAAGGATAGTGCCAATAAGAACTATGGTTGCAGCAGTACCTGCTCCCTTGGGTCGTCCTTCTTCAGAACCATCTGGTAATTCTACAGGGCTTTACCATCCAGTTCTTGGGAGATTTCAACGTTTAACTACAGGGCAGGCAAATAGTGAACAAGGATCTCAATCAGCAAGTCAGCATCGTGCAGCACAACATTCAACTCCTGAATCCATGTTGGAAAGGCAAAGCGCGGAAGAGACTGCAAGGAATGGTACCTCATCAACTCCAAACACGAGACAAGAGCCATCTAATTCACGTGTTGTAAATATCAATATTCTGTCAGCTGGTGGGGCCCAAAACAACCAAGAATCTGATAGACAGATACCAAGCAGTGTACTTCAGTTTTTAAGAACACTCTTTCCTGGGGGAGAAATTCACGTGGAGGATTCAAGCTTACAAGGAGCAAATGTGGGTTCCACCTCAGCGAATGCTGCAACATCAAGGAGTTCTCCCCAAGTCCCTGATGCTGCACCTCCTGTTAGTGATGAAGGATTATTTTTGTCTAATGTACTCCGTGAGATCATGCCGGTCATATCTCAACGTGTAGGGTCTGAGAGAAATCCTTCTGAAGATCAAACAGCTCAAGATTCGTCAACTCAGGTTGAAACAAATGCTGGGACATCACGCAGACGCAGTGGTTCTGAACCAAACCCTCCAGATGCAAAACGCCAAAAGATGGAATGA 2205 0.4485 MEELLTGVLCGLWRMGSNSVEKIPINNSTGGSETTIEIKIKTLDSQTYTLKVDKQMPVPALKEQIASVTGVLSEQQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRHPDLPPPGSLPNHSVTEPNSSTSHGHSTQVAPGVFIETFNVPVQGDGVPPEINRIVSAVLGSIAGLPNFASGGEGIVVRDNDSQGLGRTSDSSGISDPLRPILDQTGLRSLTDRLRNTFGVSASGSLGSLQPPVIPDSLTTLSQYLSHMGHEFDTIVREVREGGNNAQAAEARSNEEMGSASSHLGSTPANLSSPASLAEVLLSTRRMIIEQAGECILQLARQLENQSDVTDASSRSSFQSRAMRTGTLFYNLGAFLLELGRTTMTLRLGQTPSEAVVNGGPAVFISPTGPNHIMVQPLPFQPGASFGAVPVGAAQSDSSLGSGLGSNFFPRRIDIQIRRGTSTTTPNANQDDRGDTQSASVQRNPAESSASQATSRRPDASIAGEPAIRIVPIRTMVAAVPAPLGRPSSEPSGNSTGLYHPVLGRFQRLTTGQANSEQGSQSASQHRAAQHSTPESMLERQSAEETARNGTSSTPNTRQEPSNSRVVNINILSAGGAQNNQESDRQIPSSVLQFLRTLFPGGEIHVEDSSLQGANVGSTSANAATSRSSPQVPDAAPPVSDEGLFLSNVLREIMPVISQRVGSERNPSEDQTAQDSSTQVETNAGTSRRRSGSEPNPPDAKRQKME* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3576 734 MobiDBLite consensus disorder prediction 446 494 - -
Tpr4g3576 734 Pfam Ubiquitin family 38 107 IPR000626 GO:0005515
Tpr4g3576 734 ProSiteProfiles Ubiquitin domain profile. 36 111 IPR000626 GO:0005515
Tpr4g3576 734 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 15 734 - -
Tpr4g3576 734 SUPERFAMILY Ubiquitin-like 26 125 IPR029071 -
Tpr4g3576 734 MobiDBLite consensus disorder prediction 689 721 - -
Tpr4g3576 734 MobiDBLite consensus disorder prediction 540 592 - -
Tpr4g3576 734 MobiDBLite consensus disorder prediction 643 666 - -
Tpr4g3576 734 MobiDBLite consensus disorder prediction 643 661 - -
Tpr4g3576 734 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 15 734 - -
Tpr4g3576 734 SMART ubq_7 36 107 IPR000626 GO:0005515
Tpr4g3576 734 Gene3D - 30 122 - -
Tpr4g3576 734 MobiDBLite consensus disorder prediction 446 486 - -
Tpr4g3576 734 MobiDBLite consensus disorder prediction 272 298 - -
Tpr4g3576 734 MobiDBLite consensus disorder prediction 275 298 - -
Tpr4g3576 734 MobiDBLite consensus disorder prediction 686 734 - -
Tpr4g3576 734 PRINTS Ubiquitin signature 46 66 IPR019956 -
Tpr4g3576 734 PRINTS Ubiquitin signature 67 87 IPR019956 -
Tpr4g3576 734 PRINTS Ubiquitin signature 88 109 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3576 Tpr-Chr4 41603226 41612725 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3576 36 107 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 1.53e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3576 K23390 - gmx:100783070 1054.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3576 4 41603226 41612725 Tpr4g3576 4 41603226 41612725 ECH