Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3575 ATGGATGAACAGACTGAGAAGGCTTATTTGAAGCAACCAAAAGTGTTTCTAAGCTCGAAGAAATCTGGAAAGGGAAAGAGACCTGGAAAAGGTGGAAATCGCTTCTGGAAATCCATTGGTCTTTCATTCAAGACTCCCAGAGATGCCATTGAAGGAACCTACATTGACAAGAAGTGCCCCTTCACCGGCAATGTTTCCATCAGGGGCCGTATTTTATCTGGAACCTGTCACAGTGCTAAGATGAACAGGACTATTATTGTTAGAAGGAATTATCTTCACTTTATTAAGAAGTATCAGATATTGTGA 306 0.4085 MDEQTEKAYLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLSFKTPRDAIEGTYIDKKCPFTGNVSIRGRILSGTCHSAKMNRTIIVRRNYLHFIKKYQIL* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3575 101 SUPERFAMILY Nucleic acid-binding proteins 68 99 IPR012340 -
Tpr4g3575 101 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
Tpr4g3575 101 Gene3D - 1 101 - -
Tpr4g3575 101 PANTHER 40S RIBOSOMAL PROTEIN S11-1-RELATED 1 99 - -
Tpr4g3575 101 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 99 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3575 Tpr-Chr4 41596486 41598574 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3575 1 99 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 86.869 2.06e-52 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3575 K02949 - gmx:100784140 184.111