Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3572 ATGTGTGTGCAAGAGGGTGAACAAGTTGATCAAGATAACAATATGGAAGAACTTGATAATAGAAGAATTTCATGGCCTTTGCATTGTGATCTCTTACATACCCAGATGGATAATTCAGAAAAAGACTCTTCTTTTAGAATTTCTAGTGACCATATTAGTGCTGTTAATTCATTTCCTCTGGAAAGCATTTGTGAGGATTCAGAGATTGCAGACAAAAAACAGAACCTGATAAATTTCGTCCCTATGCTTCGGTCGGGGGAGTGGTCTGATATTGGAGGTCGACCTTATATGGAGGATACTCACATATGCATTGGAGACTTGGCAAAGAAATTTGGTTATAATGTAATCAGCGACGAAGCTATTTCCTTTTATGGTGTATTTGATGGACATGGTGGGAAGAGTGCTGCACAATTTGTTCGCGATCATCTGCCGAGGGTGATTGTTGAGGATGCTGACTTCCCTCTTGAACTTGAGAAGGTGGTAACAAGGTCATTTTTGGAGACTGATTCAGAGTTTGCAAAAACATGCTCTATTGACTCTTCTCTATCTTCTGGTACAACTGCATTGACTGCAATTATATTTGGAAGGTCTTTACTTGTGGCCAATGCCGGGGACTGCCGCGCTGTTTTGTCCCGAGGCGGATCAGCTATAGAAATGTCCAAAGATCACAGGCCATTATGCATGAAAGAAAGAATGAGGATTGAGTCGCTTGGTGGATTTGTTGACGATGGTTACTTGAATGGACAGTTAGGTGTCACGCGTGCTCTAGGCAACTGGCATCTCGAAGGAATGAAGGAAATGAGTGGAAGAGGTGGACCTTTGAGTGCTGAACCAGAACTTAAATTGACGACATTGACAAAAGGTGACGAGTTTTTGATAATTGGTAGTGATGGAATATGGGATGTTTTTCGTAGCCAAAATGCCGTAGATTTTGCTAGGAGGAAGCTTCAACAGCATAACGATGTGAAACAATGTTGCAAGGAAATAATAGGAGAAGCAATAAAGAGAGGCGCGACAGATAATTTAACTGTTGTAATGGTTTGTTTTCAATCAAATCCACCACCACCTTTGGTTGTTGAAAGGCCTAGAGTCAGAAGAAGCATATCTGCTGAGGGACTTCAGAATCTTAAATGCCTTTTAGAAGGATAG 1149 0.4125 MCVQEGEQVDQDNNMEELDNRRISWPLHCDLLHTQMDNSEKDSSFRISSDHISAVNSFPLESICEDSEIADKKQNLINFVPMLRSGEWSDIGGRPYMEDTHICIGDLAKKFGYNVISDEAISFYGVFDGHGGKSAAQFVRDHLPRVIVEDADFPLELEKVVTRSFLETDSEFAKTCSIDSSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRGGSAIEMSKDHRPLCMKERMRIESLGGFVDDGYLNGQLGVTRALGNWHLEGMKEMSGRGGPLSAEPELKLTTLTKGDEFLIIGSDGIWDVFRSQNAVDFARRKLQQHNDVKQCCKEIIGEAIKRGATDNLTVVMVCFQSNPPPPLVVERPRVRRSISAEGLQNLKCLLEG* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3572 382 CDD PP2Cc 84 349 IPR001932 -
Tpr4g3572 382 SUPERFAMILY PP2C-like 75 350 IPR036457 -
Tpr4g3572 382 Pfam Protein phosphatase 2C 96 341 IPR001932 -
Tpr4g3572 382 SMART PP2C_4 74 347 IPR001932 -
Tpr4g3572 382 PANTHER PROTEIN PHOSPHATASE 2C 1 370 IPR015655 GO:0004722|GO:0006470
Tpr4g3572 382 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 370 - -
Tpr4g3572 382 ProSiteProfiles PPM-type phosphatase domain profile. 84 349 IPR001932 -
Tpr4g3572 382 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169
Tpr4g3572 382 Gene3D - 66 353 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3572 Tpr-Chr4 41562710 41565704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3572 73 382 PP2C-type Phosphatase Gene Family AT2G25620 60.510 1.60e-134 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Tpr4g3572 PP2C 8.4e-66 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3572 K14803 - gmx:100782648 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3572 4 41562710 41565704 Tpr4g3572 4 41562710 41565704 ECH