Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3570 ATGGGTTCCAGCTCTAGTAGACTCGGGTCTCGCCCTTCTTCTACTCCAAGAGTCAACAACACCCACAACCATCGCTTCAGATTCTCTTCCTTTCTCTGCGGCGCTTCCACCTCTCGCTCCATTTCTCAGATGGAAGAACATCAATATGAAGAACTTCAAGTTAATTCGGCTAGAGATTTTGATGATGGAATTCAGAAAGTTGCTGATGAATCATCATTATCATGTACAGAAGAAGCTAGAATTAGGTGCTGTCCTCAAGCTGAAACTTCAACCTCAACTGGTATGAGAACCGAGTTCTGCGGGAATGATACTGTTGAAGGTTCTTCTGGAAATGTTGCAACGAGTGTTCAGAGGAATTGCTTGTCTGAACATAAGGAGCTAGTCCCTCCTTATCGGGTAAGTGCTGGTCATGGTCATCCTGAATCATATAGTGATAGTAACAACACAGCTAGTACTTCATTTGTTGAACAGCAGTCTTCAGACCCAGTTTCTGTAAATGTTTCTGCTAACAAGGATAGAATCAATAATGTTGATGATCCAGTTGTTAGTGGTGTCTCTCGAATCTCTCACGAGACGGAGCGTCCAAGGAGCTCAATCTCTCAAGAGCATGGAAATCCCAGGTCTGGTGAAATTTCTGTTGAGAATGACACGGATGCAGACACATATGTCCGGAGTTCTTCGATTCCTGTTTCTCAAGCTTCTAATACACCACCAACTTCTCAAGTTCCAGAAGATGAACGCCGCCATGAGACAATGCCATCAGGTTTGGGTATTCTTGTGTCCAATCGGGAAATAGTGCAGGGAAATGATGGTCTGTTTCAGGTTGATGTGGTGGCAATATCTTCCAACATTTTATCTGGCAGCAATGCAGATGCTGATGATCATGATGCCAGAAGAAGTGGTAGAAGATTATTTTGGGATGCTTTTTCACAACGTAGTTCTAGAAGGCTTGGTGATTCTCCAACTATTGTTTTCTCCACCGGAGGCACTGATGATTCAGGATCTCAAGATCGGTGGCATGTTGATTTTGATGAGGATTTAACAAATGATGGGGTTAGAGGTGCGTCTGGATATCGAGGAAGTATTCACAGATTGAATGAAAGAGTGCGAAACTCAAGATCTGAGATATGGGAAAGGCTTCGTGGAGGCCTTGATGAGATTGGTCGGTTGAACACTTCATGTCCATTAGGACTCCATGCAGATGGTATGTGCTCGTGCGAGTCATTCCCAGTGGCTGAAGAATCTAGCACTCGATCAAGTATTTCAAGAATAGTTATGCTGGCTGAGGCTCTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGGATCTGTTTCCCTATCTACGGTCTCACTTCCTGCACCTGAATCAATTGTAGACTCTTTCCCTCTGAAGTCTCACAAAAAGGTTGTTGAAGCTGACGGAGGCAATGGCGATGAACAATGTTACATATGTCTGGCGGAGTATGAAGATGGGGACCAAATACGAGTTCTTCCTTGCAAGCATGAATATCACATGTCGTGTGTCGATAAGTGGCTGAAGGAAATACACGGTGTGTGTCCTTTGTGTCGCGGCAATGTTTGTGGTGGGTTAACAGAGTCGTCAGCCAACTCAGAAGTGCAGTCTCGGTGA 1632 0.4449 MGSSSSRLGSRPSSTPRVNNTHNHRFRFSSFLCGASTSRSISQMEEHQYEELQVNSARDFDDGIQKVADESSLSCTEEARIRCCPQAETSTSTGMRTEFCGNDTVEGSSGNVATSVQRNCLSEHKELVPPYRVSAGHGHPESYSDSNNTASTSFVEQQSSDPVSVNVSANKDRINNVDDPVVSGVSRISHETERPRSSISQEHGNPRSGEISVENDTDADTYVRSSSIPVSQASNTPPTSQVPEDERRHETMPSGLGILVSNREIVQGNDGLFQVDVVAISSNILSGSNADADDHDARRSGRRLFWDAFSQRSSRRLGDSPTIVFSTGGTDDSGSQDRWHVDFDEDLTNDGVRGASGYRGSIHRLNERVRNSRSEIWERLRGGLDEIGRLNTSCPLGLHADGMCSCESFPVAEESSTRSSISRIVMLAEALFEVLDEIHRQPGSVSLSTVSLPAPESIVDSFPLKSHKKVVEADGGNGDEQCYICLAEYEDGDQIRVLPCKHEYHMSCVDKWLKEIHGVCPLCRGNVCGGLTESSANSEVQSR* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3570 543 MobiDBLite consensus disorder prediction 140 173 - -
Tpr4g3570 543 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 541 - -
Tpr4g3570 543 MobiDBLite consensus disorder prediction 218 241 - -
Tpr4g3570 543 MobiDBLite consensus disorder prediction 135 250 - -
Tpr4g3570 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 446 528 IPR013083 -
Tpr4g3570 543 SMART ring_2 482 523 IPR001841 -
Tpr4g3570 543 Pfam Ring finger domain 481 524 IPR001841 -
Tpr4g3570 543 MobiDBLite consensus disorder prediction 1 21 - -
Tpr4g3570 543 ProSiteProfiles Zinc finger RING-type profile. 482 524 IPR001841 -
Tpr4g3570 543 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 541 - -
Tpr4g3570 543 SUPERFAMILY RING/U-box 476 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3570 Tpr-Chr4 41538758 41542890 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3570 393 528 C3H Transcription Factor Family AT5G45290 51.634 1.12e-38 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3570 - - gmx:100783604 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3570 4 41538758 41542890 Tpr4g3570 4 41538758 41542890 ECH