Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3566 ATGGCGTTTGATCAAAATTCTGTTCCAAAGGATCTGCGTGTATTGAATGTGGCTCCAATAATGGTGGAGGAGACTCTCATTTCACCGGCAAGCGTCACCTCGCCTCCGACTCCTGATTCAGCTTCTGATTATTTCTATCCTGCTTCGGCCCCCGCGTCAGCAGCCTGGTGCGTCCGCCCTATTGTGAGTCCTCCTTCTATTGGATTAAACTATGGTTCCGGTTATGGTAACCGTGTTATGGCTGGAAATGCATTGAATTTGGGAAATTGGGTAGGGACTAGTAATAGTAGTAATAATAATAATAACAATAATGCTTTGCATTGTAATGATGGTGTTAATGTGAATGTAAGTGGTTTTTCTTATGGTGGTCATGGTGGAAATAGATCGGTTGATGATGCCAGCGATGATTCAAGTCCGGGTAGGAAAGTTAAATTTTTGTGTAGTTTTGGTGGGAAGATTTTGCCTAGGCCTAGTGATGGTGTGTTGAGATATGTGGGAGGGCAGACAAGGATAATTAGTGTTAGGAAAGATGTGAGTTTTAATGATTTGGTCCAGAAAATGGTAGATACTTATGGACAACCTGTGGTTATTAAGTATCAGTTACCCGAGGAGGATCTTGATGCATTGGTTTCCATTGCTTGTCCTGATGATGTTGAGAATATGATGGAGGAATATGGAAAATTGGTTGAGAGATCTCCTGATGGTTCTGCTAAATTGAGGGTTTTTTTGTTTCCTATGTCAGAGGTTGATATTTCTAGTGCAGCGCAGGTTGGAGATTTGCAGGATACCGGGCAGAAATATTTTGATGCTGTGAATGGTATTGTGGATGTGGATGGTGGGTTCAAGAAGAAAGAGAGTGTTACAAGTGCAGCTTCAACACAAAATTCTGATTTGAGTGGGATAGACACTATTGATAGTTCTATTGCCGGTCAAGGGGATTCGTCGCCCTGCGTGTTATCGCCTAGAGAGTATGTGGCTACTTCTCCAGACACAAGTGCACAGTTTCTGGTTTCTGAGTCCAGTACACCAGTTTACTCAGGTGCATCTCCTATTTCATTTGGCACGCCTGTGACTAAGACCAGTCCATTATACCCTTCATATATGCAGAATGAGATTGAGTTAGAAAAGCCTGTTCCTGTTACTTTGTCCCAGCAACCATTTGAATTGCATCAATCAAGAATGGAAATTCCACCTTCACCTTATTTGAACCACAGAGAGTATGTTCAGCTGCCTCCCCAGATGGGGTTCCCAAATCCTCATCTTTTAGGAAAGACGGGGCCTTTTTTCGCCCAGCAACAGTTTCAGAGTAATGCTTCTGGATTAGCTTACCATCAGACCATCCCCGGAGCACAAATTACAATGACTCAACCTTCTTCTCGTCTTGGTATAAGACCAAATCTCATCCAGCCACAACCATTGATACAAACGCAACATAATCATCTGAACCAATATAGTGATGAAAATACATCAGGAATAAGGATTGTCCAGTTTCCTTCCGAACACAACTACAATACATATCAGGTTCCAGTAAATCAAGTTCCCACGAATCAAGTTCCATCTGTCATAGTTGGGGGTAATTGTGGTTGGGTTCAGGTTCCTCCACAACAACACGAGCATGGGTTATCACCTCAACAACAAGTAATTACCTCCGAGCAAATCCTTAGAGCTGAGGGATGTTCTATGTGTCAGAAAAAGCTGCCTCACGCCCATTCAGATCCAGTGGTTCAGGATCAACACGATGGCACTTCAGGTCCAGTTCCTGATTCACGCCCAAGTTACAGTAGTTTTCCGATGGAGGATAATGTAAAACCTCAAGCAACAAAGAGGCTTGAGCCTATGGTGGCATCGCCCTTAAAGGAAGGCATTTTTGAACAAGGGTATAGCACAAGGCCAAGTGTCATTAGCAAATTGAAAGCTCATAATGGAGTAAGACCTTGTACTGATAATGCTGTGATTTCTTATAATTTTGAGCCTCAGAGTGAAGGTGGGACGATTTTTATCCAAAATCCAAAAGAATTTGATCATCCCATGAATTCATGTGTCCAAGAAACAATTGGTAGGATAGGTGAAAAACGTTCTTCTGGGGATGGGTTTGGGGCCATTGGAACACCACCACCGTCTTATCCAGATGATGTTGTACACCAGCATACGACGCCGGTTGAAAACTGGGTTAAACAAGATGATCTTGTGAATAAACATGTTAATAATGATATACCTATAGTTGATGGAACGCCTATACATACTTCAGAGTGCACCGCTCAAGGATCTCCCAAAGAATACACTAATGAGCTTACTGGTGTCATTTCAAAATCAGATGCAGTAGATAATTGGATTAGACAGGGATATCTAAGACCTGTTGATGGAAGGAATGACACACTCAAGATAAACATGGCGGAAGGTTATGTAGGTGATGATCAATGCTTGCTTCCACTTGATAAATCATTAGATTACAACAGCCAGATTGCTGCAGAGGAAGAGGTGATTCTGGATAACAACTTTGGCACATCAAAATTGATAGTTGATGCAAATAAAATTAAGATGATAGCTGTGCAACCATGTTCTTCTAAGGAAATTTCATTCAGGCGCAATTCCAGGACAGGGGAATACAATGATGTTGTACAATCACCTGCGTTGGACGTTACTCAATCAAAGATTGTAAACCACCACATGGATGATTCAACATCATCTACATCATCACCATCTTTCTTGTTTGGGGATATGCAGGATTCTCCAAACTCAGTTTTCGGCAATCAGGATCCTTGGAATATACAACATGGAACCTACAAGAAATCTAATTTGGATGCACAATTGGATGGTGACCTCTACGAGTCATTCAAACATAATTTAACTTTTGAAAATGGTTCAACCGAAGACCAACAACTTAAAGTTGTTGCTGAAGATGTAGCAGCTTCTGTTCTGCACCCATGTGCTCCTTCAAATCCTAACTTGCAAGCTGAAGATGTTTATTGTCATGAAAACATTCAGGATGGTAATGTTCAAAATAATCTAATGCATGCGAAGTGTAGAGATATAACTCAGGATGTCAAGAGTAACCTACCAGAGAAGGGAAATTTTGGCTTTCCGACATCGGGTGTTGGACGTTTGCAGATTATAAAGAACTGTGACCTTGAAGAGCTGACAGAATTGGGTTCTGGTACCTTTGGGACTGTTTATCATGGAAAATGGAGGGGAACTGATGTTGCAATTAAGCGAATAACTGATAGATGTTTTGCTGGAAAGCCTTCGGAACAAGAGCGCATGAGAGACGACTTCTGGAATGAGGCAATCAAGCTTGCAGACTTGCACCATCCAAATGTGGTTGCTTTTTATGGTGTTGTGCTTGATGGCTCAGGAGATTCCGTGGCAACAGTAACTGAGTACATGACTAATGGTTCTCTCAGAAATGCCTTGCAAAAGAATGAGAGGAATCTAGACAAGCGCAGACGTCTTATGATTGCAATGGATGTGGCCTTTGGAATGGAATACCTGCATGGAAAAAACATAGTACACTTTGACTTGAAAAGCGACAACTTGCTTGTGAATCTCCGAGATCCACACCGCCCAATATGCAAGGTTGGTGACTTGGGTCTATCCAAAGTAAAATGTCAGACACTGATCTCCGGAGGTGTGAGAGGAACTCTACCATGGATGGCTCCAGAGCTACTGAACGGAAGCAGTAGCCTTGTATCAGAGAAGGTTGATGTGTTTTCATTCGGCATTGTGATGTGGGAACTCTTAACTGGCAATGAGCCATACGCTGATTTGCACTATGGTGCTATTATAGGTGGTATTGTGAGCAACACTTTGCGCCCTTCAATTCCCGAATCTTGTGATCCGGAATGGTGTTTGTTGATGGAGAGATGTTGGGCCTCAGAACCATCGGAGAGACCCAATTTCACTGACATTGCTGATGAATTACGTTCTATGGCAACCAAACGCCAAAATCAACAGCTACAAACCTCTCATTTGCACACACAACTCAACAAATGA 3990 0.4228 MAFDQNSVPKDLRVLNVAPIMVEETLISPASVTSPPTPDSASDYFYPASAPASAAWCVRPIVSPPSIGLNYGSGYGNRVMAGNALNLGNWVGTSNSSNNNNNNNALHCNDGVNVNVSGFSYGGHGGNRSVDDASDDSSPGRKVKFLCSFGGKILPRPSDGVLRYVGGQTRIISVRKDVSFNDLVQKMVDTYGQPVVIKYQLPEEDLDALVSIACPDDVENMMEEYGKLVERSPDGSAKLRVFLFPMSEVDISSAAQVGDLQDTGQKYFDAVNGIVDVDGGFKKKESVTSAASTQNSDLSGIDTIDSSIAGQGDSSPCVLSPREYVATSPDTSAQFLVSESSTPVYSGASPISFGTPVTKTSPLYPSYMQNEIELEKPVPVTLSQQPFELHQSRMEIPPSPYLNHREYVQLPPQMGFPNPHLLGKTGPFFAQQQFQSNASGLAYHQTIPGAQITMTQPSSRLGIRPNLIQPQPLIQTQHNHLNQYSDENTSGIRIVQFPSEHNYNTYQVPVNQVPTNQVPSVIVGGNCGWVQVPPQQHEHGLSPQQQVITSEQILRAEGCSMCQKKLPHAHSDPVVQDQHDGTSGPVPDSRPSYSSFPMEDNVKPQATKRLEPMVASPLKEGIFEQGYSTRPSVISKLKAHNGVRPCTDNAVISYNFEPQSEGGTIFIQNPKEFDHPMNSCVQETIGRIGEKRSSGDGFGAIGTPPPSYPDDVVHQHTTPVENWVKQDDLVNKHVNNDIPIVDGTPIHTSECTAQGSPKEYTNELTGVISKSDAVDNWIRQGYLRPVDGRNDTLKINMAEGYVGDDQCLLPLDKSLDYNSQIAAEEEVILDNNFGTSKLIVDANKIKMIAVQPCSSKEISFRRNSRTGEYNDVVQSPALDVTQSKIVNHHMDDSTSSTSSPSFLFGDMQDSPNSVFGNQDPWNIQHGTYKKSNLDAQLDGDLYESFKHNLTFENGSTEDQQLKVVAEDVAASVLHPCAPSNPNLQAEDVYCHENIQDGNVQNNLMHAKCRDITQDVKSNLPEKGNFGFPTSGVGRLQIIKNCDLEELTELGSGTFGTVYHGKWRGTDVAIKRITDRCFAGKPSEQERMRDDFWNEAIKLADLHHPNVVAFYGVVLDGSGDSVATVTEYMTNGSLRNALQKNERNLDKRRRLMIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGNEPYADLHYGAIIGGIVSNTLRPSIPESCDPEWCLLMERCWASEPSERPNFTDIADELRSMATKRQNQQLQTSHLHTQLNK* 1330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3566 1329 Gene3D Transferase(Phosphotransferase) domain 1 1131 1329 - -
Tpr4g3566 1329 SUPERFAMILY CAD & PB1 domains 158 251 - -
Tpr4g3566 1329 MobiDBLite consensus disorder prediction 570 597 - -
Tpr4g3566 1329 SUPERFAMILY Protein kinase-like (PK-like) 1036 1304 IPR011009 -
Tpr4g3566 1329 Gene3D - 163 245 - -
Tpr4g3566 1329 SMART PB1_new 157 246 IPR000270 GO:0005515
Tpr4g3566 1329 Gene3D Phosphorylase Kinase; domain 1 1037 1130 - -
Tpr4g3566 1329 PANTHER SERINE-THREONINE PROTEIN KINASE 931 1313 - -
Tpr4g3566 1329 PANTHER SERINE-THREONINE PROTEIN KINASE 108 885 - -
Tpr4g3566 1329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1168 1180 IPR008271 GO:0004672|GO:0006468
Tpr4g3566 1329 Pfam PB1 domain 162 245 IPR000270 GO:0005515
Tpr4g3566 1329 Pfam Protein tyrosine and serine/threonine kinase 1046 1306 IPR001245 GO:0004672|GO:0006468
Tpr4g3566 1329 ProSitePatterns Protein kinases ATP-binding region signature. 1049 1080 IPR017441 GO:0005524
Tpr4g3566 1329 SMART serkin_6 1043 1309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3566 1329 ProSiteProfiles Protein kinase domain profile. 1043 1310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3566 1329 CDD PB1_UP2 146 244 - -
Tpr4g3566 1329 CDD STKc_MAP3K-like 1049 1306 - -
Tpr4g3566 1329 MobiDBLite consensus disorder prediction 576 597 - -
Tpr4g3566 1329 PRINTS Tyrosine kinase catalytic domain signature 1125 1138 IPR001245 GO:0004672|GO:0006468
Tpr4g3566 1329 PRINTS Tyrosine kinase catalytic domain signature 1162 1180 IPR001245 GO:0004672|GO:0006468
Tpr4g3566 1329 PRINTS Tyrosine kinase catalytic domain signature 1233 1255 IPR001245 GO:0004672|GO:0006468
Tpr4g3566 1329 PRINTS Tyrosine kinase catalytic domain signature 1277 1299 IPR001245 GO:0004672|GO:0006468
Tpr4g3566 1329 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 108 885 - -
Tpr4g3566 1329 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 931 1313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3566 Tpr-Chr4 41509637 41518049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3566 68 610 MAP Kinase Kinase Kinase AT3G46920 37.906 1.61e-79 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Tpr4g3566 PK_Tyr_Ser-Thr 7.5e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3566 - - mtr:MTR_4g116520 2180.6