Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3564 ATGGCGTTTCAAGAGCATCTACAGCACGAAATAGCATACCAGAGATTCACAGAAGAAGAAGATGAAGAAAGAGTACCATGGCTTAACAACAACAACAGTGTAAACGCGCGTCAACAGAATTTCATGCACTTGGAACCGGAGAGAAGGGAGAAAAGCATGGATCGGAACCGGAGTGAGAACAATTGTGAAACGGAAGAGTTAAGGGAATACAAAGCGGAGATATTAGGACATCCACTTTACGATCAATTATTATCGGCGCATGTTTCGTGTTTACGAATTGCAACGCCGGTGGATCAGCTTCCGAGAATCGATGCTCAGCTTCAACAGTCACAGCGTGTTCTTCAAAAATATTCTTCTGTTGGAATTGGAAATATGGATCCCAAGGAGCTTGATCACTTTATGACGCATTATGTTCTTTTGCTGTGTGCCTTCAAAGAACAGTTGCAACAACATGTCCGTGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTGGAGCAGTCTCTGCAAAGCTTGACAGGTGTATCTTCAGGTGAAGGAACTGGAGCAACAATGTCAGACGATGAAGAGGAGCAGGCAGAGAGTAATGCCAAGTTATACGAAGGAAGCGGCTTTGATGGCGGCGTTGATACTCTTGGCTTTGGTCCTCTTGTCCCCACCGAGACTGAAAGGTCTTTGATGGAGCGAGTTAGGCTTGAGCTGAAGCATGAGCTCAAACAAGGTTACAAGGAGAAGATTGTAGATGTAAGAGAAGAAATTCTAAGAAAGAGAAGAGCAGGGAAACTCCCGGGGGACACCACCTCCCTTTTGAAGGCTTGGTGGCAATCACATTCTAAATGGCCCTACCCTACTGAGGAAGACAAGGCTAGATTGGTGCAGGAAACAGGCTTGCAATTGAAGCAAATAAACAACTGGTTCATAAACCAAAGGAAAAGGAACTGGCATGCTAACTCCCCATCCTCTAGTACTTCCAAAACCAAACGCAAGAGCAGTGCAGGTGGTGAAACGAGTAACCAGAGCTTCATGTGA 1032 0.4564 MAFQEHLQHEIAYQRFTEEEDEERVPWLNNNNSVNARQQNFMHLEPERREKSMDRNRSENNCETEELREYKAEILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVLQKYSSVGIGNMDPKELDHFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSSGEGTGATMSDDEEEQAESNAKLYEGSGFDGGVDTLGFGPLVPTETERSLMERVRLELKHELKQGYKEKIVDVREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANSPSSSTSKTKRKSSAGGETSNQSFM* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3564 343 Coils Coil 53 73 - -
Tpr4g3564 343 SMART ELK_2 234 255 IPR005539 GO:0003677
Tpr4g3564 343 Pfam Homeobox KN domain 274 313 IPR008422 GO:0003677|GO:0006355
Tpr4g3564 343 Pfam KNOX1 domain 70 111 IPR005540 GO:0003677|GO:0005634
Tpr4g3564 343 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 20 335 - -
Tpr4g3564 343 MobiDBLite consensus disorder prediction 314 343 - -
Tpr4g3564 343 Gene3D - 260 336 - -
Tpr4g3564 343 SUPERFAMILY Homeodomain-like 256 320 IPR009057 -
Tpr4g3564 343 MobiDBLite consensus disorder prediction 175 196 - -
Tpr4g3564 343 SMART HOX_1 256 321 IPR001356 GO:0003677
Tpr4g3564 343 ProSiteProfiles 'Homeobox' domain profile. 254 317 IPR001356 GO:0003677
Tpr4g3564 343 SMART KNOX2_2 119 175 IPR005541 GO:0003677|GO:0005634
Tpr4g3564 343 SMART KNOX1_2 68 112 IPR005540 GO:0003677|GO:0005634
Tpr4g3564 343 ProSiteProfiles ELK domain profile. 234 254 IPR005539 GO:0003677
Tpr4g3564 343 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 20 335 - -
Tpr4g3564 343 CDD homeodomain 257 316 IPR001356 GO:0003677
Tpr4g3564 343 Pfam ELK domain 234 255 IPR005539 GO:0003677
Tpr4g3564 343 Pfam KNOX2 domain 127 174 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3564 Tpr-Chr4 41498774 41505043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3564 70 334 Homeobox Transcription Factor Family AT5G11060 81.413 1.69e-161 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Tpr4g3564 KNOX2 4.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3564 - - gmx:100803673 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3564 4 41498774 41505043 Tpr4g3564 4 41498774 41505043 ECH