Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3553 ATGCCGGACGGAGAATCATCCACCGCCGTTGTTGCTGATCAACAAAACTCCTTCAGTCTTTCCACAGTAAAAAACCATGATGATACTGTAAAAAAAGATCCAACCAAAATTGCAAGAAAGTATCAATTGGCGTTATGCAAGAAAGCTATGGAGGAAAATATAATTGTTTATTTGGGAACAGGATGTGGGAAGACACACATTGCTGTGCTGCTTATGCATGAAATGAGACATTTGATAAAGAAGCCGAACAAGGATGTATGCGTCTTTCTTGCACCAACCGTTGCTTTAGTTAATCAGCAAGCGAAGGTTATATCTGACTCTGCTGATTTTGAAGTTGGAACTTACTGTGGGAGTAACAAGCGCTCCAAATCTCATCAATATTGGGAGGAGGAGATTGAACAATTTGAGGTTCTTGTTATGACCCCACAAATATTACTCCATAATTTATCTCATTGTTTCATCAAGATGGAGATGATCGCACTTTTGGTATTTGATGAATGCCATCATGCTCAAGTCAAAAGCAGCCATCCTTATGCAGAAATCATGAAGATCTTCTATAAAAGTAATTCCACAAAAGTTCCCCGCATATTTGGCATGACTGCTTCCCCCGTTGTAGGAAAAGGTGCTTCTACTGAAGCAAATCTACCAAAAAGCATCAACAGTCTTGAACTAATCCTTGATGCTAAGGTATACTCAGTTAAAGATGAGGCATTGAAATCTTTTGTGACCACTGCCAAAGTTAATATATATCATTATAGTTCGACTGCAAATATGGAAACTAGCTTGGAGTGGAAAATGGAAGAGTTTAAATTGCAGTGCACAGAAACCCTTGGTAGGAGTATAGAAGATCACCAGAAACGGCTGAGCACAAAGAAACTTCTCAAACGGGTACATGATAATGTGGTCTTCTGTCTCAGGAGTCTTGGCATTTGGGGAGCGTTGCAGGCTAGTCGTGATCTTTTGAGCGGTGATCGTTCAGAGAGGCATGCATTAGTTGAGGCAGAAGGAATTTCAAGTGATGAGTCTGTATGTGATAAATATCTTGCTAAGACAGCTGAACTATTTAATTCCAAATGCAACAGTGTTGATGATCCATCTTCCTGGGAAAGATTAAAAGAACCTTTTTTCTCAGCAAAGCTATTACGCCTCATTGGGATACTGACCACTTTCAGGTTGCAACAGAACATGAAATGTATAATTTTTGTGAATAGAATTGTGACTGCAAGAGCCCTGTCATTCATACTACAGCAGCTCCAGCTTCTAAAACACTGGAAGAGTGATTTTCTTGTAGGAGTCCATTCTGGAGTGAAGATTATGTCACGGAAGGCCATTAATTCGATTGTTGATAAGTTTCGCTCTGGAGAGTTGAATCTATTGGTTGCTACAAAAGTGGGTGAAGAAGGACTTGATATTCAGACATGTTGCCTTGTCATACGGTTTGATCTTCCAGAAAATGTTGCCAGCTTTATACAGTCAAGAGGCCGCGCACGTATGCCTCGTTCAGAATATGCATTTTTGGTTGACAGTGGCAATGAGAAGGAATTAGACATAATTGCTGGTTTTGAGAAAGATGAATTCCGAATGAATATGGAAATTGCTGACCGAACATCCAGTGAGACACACAGCATCCCTGTGGAAAGAATATTCACAGTTGATTCATCTGGTGCCTCAGTCACTGCTGCATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTTCTTTGATCCCCGGCCAAATTTCTTTTACTTTGATGATTTAGGGGGAACTGTTTGCCAGATAACTTTGCCTTCTAATGCTCCAATACACCAAATTGTCAGTACGCCACATTTGTCTATGGAAGCTGCAAAAAGAGATGCTTGCCTGAAAGCAATTGAAGAACTGTATAAATTAGGTGCTTTGAATGATTGTCTTTTGCCAAGGAAAAATGATGCAGAGACAGAGAAGGTTTTGGGCTCTTCTGATTCCGATGAGTGTGAAGATGACCGCTCGAGAGGAGAATTACATGAGATGCGAGTTCCTTCTGCATTTCGACAGTCATGGAAAAATGAGCAGAAAACTGTCCGTCTCAATTCTTACTACATTAAATTTTGCCCTACTCCGGAGGATAGGGTCTATAAAAAGTTTGGTTTATTCATCATGAGTCCTCTTCCAATGGAGGCAGAGAAACTGGAACTTGATCTTCATCTTGCTCACGGTAGATCTGTGCTGACAAAATTTAGGCCATTTGGAGTTGTAGAATTCAACAAAGATGAGATTAGGATGGCAGAGAATTTTCAAGAAATGTTCCTTAGAGTTATTCTTGATAGATTAGAGTTTGTTTCTAAGTTTGTAGAATTGGGTGCTGAATCCCGCACAAACACATCGACCTTCTACCTTTTGCTTCCAGTCATATTGAAAGAATATGATGATGTGATGAAAGTAGATGTGATGAAAGTAGATTGGGAGACAGTGAAGAGATGCCTTTGTTCACCAGTTTTCAGGCATCCAGAAGATACTTTGAATAAAAAGGTTACCCCTTTGGATAATCATCTGCAACTTGCCAATGGTTACAGAAGTGTTAGAGATGTTGAGAATAGTTTAGTGTATGTTCCACATACAAAGTTCTTCTATTGTGTCACAAATATTATCTATGAAAAGAATGGATTCAGTCTTTGTAAAGATTCAGACACTTCAAGCTACGTGGACCACTTCAATGATAAGTTTTCCATTAATCTCAAACGCCCTGAACAACCACTTCTGCATGCAAAACAACTTTTCAATTTGCACAACCTGCTACACAATCGAAAGAATGAGGATGCTGAACCTGATGAGCTAAAGGAATACTTAATTTATTTACCTCCCGAGCTATGCGAACTGAAAATAGTAGGCTTTTCGAAGGATATTGGGAGTTCCATATCTTTGCTACCTTCAATTATGCACCGTCTTGGAAACTTGCTGGTTGCCATTGAACTGAAGCACCAACTATCTTCCTCCTTCCCAGAGGCAACTAAAATTAGTGCCCATAGATTTCTAGAAGCTCTCACCACCGAGAAGTGTCAGGAGCGCTTTTCCCTTGAAAGACTTGAAGTGCTTGGCGACGCTTTCCTTAAATTTGCTGTTACACGTCATTTTTTTCTCTTGCATGACAGCTTTCATGAAGGAGACCTTACCAGCAAGCGATCCAATGTTGTAAATAATTCCAATTTGCTTAAGTTGGCTATTAGGCGCAATTTGCAGGTCTATATACGTGATCAGGCATTTGATCCATCACGGTTCTATGCATTAGGCCGTCCTTGCCCTACAGTTTGTACCAAGGAAAATGAAGACAGCATACACTTATGTTTAAATTCTGTTGAGGACAAAAGTAGTGCAAGTGCAACTGGAATCCGATGTAATAAAAATCACCATTGGTTGCATAGGAAAACAATTGCTGATGTGGTTGAAGCTCTGGTGGGGGCATTCATAGTTGACAGTGGCTTTAAAGCTGCAATTGCCTTCCTTGCATGGATTGGCATAGAAGTAAATTTTGAAGCTTCACAACTTGTTAATATTTGCACCGCAAGTGTTGGCTATTTTCCTCTTGCTGCCGAAGTAGACATTCCTTCTCTTGAAGGCAAGTTAGGACATCACTTTGTTCATAAGGGTCTTCTTCTCCAGGCATTTGTACATCCTTCTTATAATAAGCATGGAGGAGGATGTTATCAGAGATTGGAGTTTCTCGGGGATGCTGTCTTAGATTTTCTGATTACGTCATATCTATATTCAGCATATCCCAAGCTAAAGCCCGGCCAGCTGACAGATCTTAGAGCTTTGTCTGTCAATAATAAGGCATTCGCCTGTGTGGCCGTGGAACGCTGTTTTGATGAATATCTTCTGAGTGATTCAAGAGACCTGAGCAAGGCAGTAAAAAGGTATGTGGATTACATCAGAAGACCTGTATCAGACAGTGGCAATGATGGAGGGCCAAAAAGTCCCAAGGCCCTAGGTGATTTGGTAGAATCTTGTGTTGGTGCCATTCTTCTTGATTCGGGATTTGATTTGAACGAAGTTTGGAAGATCATGACTTCATTCTTGGACCCAATCATGAAATTCTCATCAAGTTTGCAGCTTAGTCCTGTTAGAGATTTGCAAGAACTTTGCCAATTTAATAATTTGGAATTGCAGCTTCTGGAATCAAAAGCAGGTAAAAAGTTTTCTGTTGAAGTCAAAGTGATTGGGGACAGTGTATGTGAAAAAGTTTGTATCACCGGCCAAAATAAAAAAGAAGCTTCTAGAATTGCTTCACAGCTACTATTTTCAAAGTTGAAGGCTCAAGGCTTGAAATTGAAGTCAAAAACTTTGGAAGACGTTCTGAAATCAACATTTAAGACGGAACCGAAACTGATTGGCTATGATGAAACCCCCATTGATGTAACAGATACGACCACCATCGGACAAGAAATGGTTAATGGAGATCTATGCAACAATTCTTATCCAGAAATCTTCCGTATCCGGGAGGTATCTGATGCATCGTCCTCGTGTGTGAAATCTGTCGCCCAACGTTTTCAATCTTCTCCTAAGGAAAAGCTTAGTGAAACCAGTCGAAATCGTGATTTTGGCATTGATTCATCAAAGACAGGAAATGCAAGATCGCGATTGTATGAATTATGTGCTGCTTATTGCTGGAAATCTCCTTCATTTGAATGCTGCAAGGAAGAGGGACCAGCCCACCTTAAGTTCTTCACTTGCAAGGCAACAATGGAGATAGAAGAGGCACCAGGTATGGTTTTCGAGTTTATTGGTGAACCTCTACCAAAGAAGAAAGATGCAGCAGATAGTGCAGCTGAGGCTGCATTTTGGTACCTGCGACAGGAAGGTTACCTGCATAATTCTAGTGATAATATTAACAAGCTCCCAACAGCTATATAA 4905 0.4031 MPDGESSTAVVADQQNSFSLSTVKNHDDTVKKDPTKIARKYQLALCKKAMEENIIVYLGTGCGKTHIAVLLMHEMRHLIKKPNKDVCVFLAPTVALVNQQAKVISDSADFEVGTYCGSNKRSKSHQYWEEEIEQFEVLVMTPQILLHNLSHCFIKMEMIALLVFDECHHAQVKSSHPYAEIMKIFYKSNSTKVPRIFGMTASPVVGKGASTEANLPKSINSLELILDAKVYSVKDEALKSFVTTAKVNIYHYSSTANMETSLEWKMEEFKLQCTETLGRSIEDHQKRLSTKKLLKRVHDNVVFCLRSLGIWGALQASRDLLSGDRSERHALVEAEGISSDESVCDKYLAKTAELFNSKCNSVDDPSSWERLKEPFFSAKLLRLIGILTTFRLQQNMKCIIFVNRIVTARALSFILQQLQLLKHWKSDFLVGVHSGVKIMSRKAINSIVDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPENVASFIQSRGRARMPRSEYAFLVDSGNEKELDIIAGFEKDEFRMNMEIADRTSSETHSIPVERIFTVDSSGASVTAAYSISLLHQYCSKLPHDEFFDPRPNFFYFDDLGGTVCQITLPSNAPIHQIVSTPHLSMEAAKRDACLKAIEELYKLGALNDCLLPRKNDAETEKVLGSSDSDECEDDRSRGELHEMRVPSAFRQSWKNEQKTVRLNSYYIKFCPTPEDRVYKKFGLFIMSPLPMEAEKLELDLHLAHGRSVLTKFRPFGVVEFNKDEIRMAENFQEMFLRVILDRLEFVSKFVELGAESRTNTSTFYLLLPVILKEYDDVMKVDVMKVDWETVKRCLCSPVFRHPEDTLNKKVTPLDNHLQLANGYRSVRDVENSLVYVPHTKFFYCVTNIIYEKNGFSLCKDSDTSSYVDHFNDKFSINLKRPEQPLLHAKQLFNLHNLLHNRKNEDAEPDELKEYLIYLPPELCELKIVGFSKDIGSSISLLPSIMHRLGNLLVAIELKHQLSSSFPEATKISAHRFLEALTTEKCQERFSLERLEVLGDAFLKFAVTRHFFLLHDSFHEGDLTSKRSNVVNNSNLLKLAIRRNLQVYIRDQAFDPSRFYALGRPCPTVCTKENEDSIHLCLNSVEDKSSASATGIRCNKNHHWLHRKTIADVVEALVGAFIVDSGFKAAIAFLAWIGIEVNFEASQLVNICTASVGYFPLAAEVDIPSLEGKLGHHFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDFLITSYLYSAYPKLKPGQLTDLRALSVNNKAFACVAVERCFDEYLLSDSRDLSKAVKRYVDYIRRPVSDSGNDGGPKSPKALGDLVESCVGAILLDSGFDLNEVWKIMTSFLDPIMKFSSSLQLSPVRDLQELCQFNNLELQLLESKAGKKFSVEVKVIGDSVCEKVCITGQNKKEASRIASQLLFSKLKAQGLKLKSKTLEDVLKSTFKTEPKLIGYDETPIDVTDTTTIGQEMVNGDLCNNSYPEIFRIREVSDASSSCVKSVAQRFQSSPKEKLSETSRNRDFGIDSSKTGNARSRLYELCAAYCWKSPSFECCKEEGPAHLKFFTCKATMEIEEAPGMVFEFIGEPLPKKKDAADSAAEAAFWYLRQEGYLHNSSDNINKLPTAI* 1635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3553 1634 Pfam Dicer dimerisation domain 563 648 - -
Tpr4g3553 1634 SUPERFAMILY dsRNA-binding domain-like 1538 1624 - -
Tpr4g3553 1634 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 563 653 IPR005034 GO:0016891
Tpr4g3553 1634 PANTHER DICER-RELATED 34 1618 - -
Tpr4g3553 1634 SUPERFAMILY RNase III domain-like 1198 1362 IPR036389 GO:0004525|GO:0006396
Tpr4g3553 1634 SMART riboneu5 1007 1178 IPR000999 GO:0004525|GO:0006396
Tpr4g3553 1634 SMART riboneu5 1214 1366 IPR000999 GO:0004525|GO:0006396
Tpr4g3553 1634 Pfam Ribonuclease III domain 1234 1343 IPR000999 GO:0004525|GO:0006396
Tpr4g3553 1634 Pfam Ribonuclease III domain 1025 1158 IPR000999 GO:0004525|GO:0006396
Tpr4g3553 1634 CDD DEXHc_dicer 36 235 - -
Tpr4g3553 1634 Gene3D Dicer dimerisation domain 558 655 IPR038248 -
Tpr4g3553 1634 Gene3D - 1368 1443 - -
Tpr4g3553 1634 CDD RIBOc 1009 1168 IPR000999 GO:0004525|GO:0006396
Tpr4g3553 1634 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 514 IPR027417 -
Tpr4g3553 1634 Gene3D Ribonuclease III domain 1196 1367 IPR036389 GO:0004525|GO:0006396
Tpr4g3553 1634 Pfam Helicase conserved C-terminal domain 385 497 IPR001650 -
Tpr4g3553 1634 Pfam PAZ domain 860 981 IPR003100 GO:0005515
Tpr4g3553 1634 SMART ultradead3 34 236 IPR014001 -
Tpr4g3553 1634 SMART PAZ_2_a_3 838 986 IPR003100 GO:0005515
Tpr4g3553 1634 SUPERFAMILY dsRNA-binding domain-like 1325 1435 - -
Tpr4g3553 1634 PANTHER DICER-LIKE PROTEIN 4 34 1618 - -
Tpr4g3553 1634 Gene3D Ribonuclease III domain 991 1169 IPR036389 GO:0004525|GO:0006396
Tpr4g3553 1634 ProSiteProfiles Ribonuclease III family domain profile. 987 1158 IPR000999 GO:0004525|GO:0006396
Tpr4g3553 1634 Gene3D - 370 533 IPR027417 -
Tpr4g3553 1634 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1540 1616 IPR014720 -
Tpr4g3553 1634 SMART helicmild6 412 499 IPR001650 -
Tpr4g3553 1634 Gene3D - 38 290 IPR027417 -
Tpr4g3553 1634 SUPERFAMILY RNase III domain-like 1006 1173 IPR036389 GO:0004525|GO:0006396
Tpr4g3553 1634 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1370 1436 IPR014720 -
Tpr4g3553 1634 CDD RIBOc 1215 1365 IPR000999 GO:0004525|GO:0006396
Tpr4g3553 1634 Pfam DEAD/DEAH box helicase 41 201 IPR011545 GO:0003676|GO:0005524
Tpr4g3553 1634 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 45 221 IPR014001 -
Tpr4g3553 1634 Gene3D paz domain 854 958 - -
Tpr4g3553 1634 ProSiteProfiles Ribonuclease III family domain profile. 1199 1343 IPR000999 GO:0004525|GO:0006396
Tpr4g3553 1634 SUPERFAMILY PAZ domain 856 958 IPR036085 GO:0005515
Tpr4g3553 1634 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 379 534 IPR001650 -
Tpr4g3553 1634 ProSitePatterns Ribonuclease III family signature. 1234 1242 IPR000999 GO:0004525|GO:0006396
Tpr4g3553 1634 ProSiteProfiles PAZ domain profile. 829 960 IPR003100 GO:0005515
Tpr4g3553 1634 SMART DRBM_3 1541 1615 IPR014720 -
Tpr4g3553 1634 SMART DRBM_3 1371 1435 IPR014720 -
Tpr4g3553 1634 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1540 1614 - -
Tpr4g3553 1634 Gene3D - 1547 1616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3553 Tpr-Chr4 41363714 41376551 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3553 397 534 Eukaryotic Initiation Factors Gene Family AT3G19760 30.496 4.18e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3553 K11592 - gmx:100797277 2464.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3553 4 41363714 41376551 Tpr4g3553 4 41363714 41376551 ECH