Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3552 ATGTCAGGTTGGGACGAAGGTGGCGTATACTACAGCGATCAAGCTCACTCATGGGACGACGGCCGTGGCGAAGGTGAAGCCACCGCTTCCAATCACACTATCCTCCAAAAGTTCAAAGAATTCATCCGAAACTTCGAGACCGGTAACAATGTCTTCCCTTACAGAGAGAGTCTTCTTCATAATCCTAAGTTCCTTACTGTTGATATGGAAGATCTCGATTCGTTTGATCCTGATCTTCCTTCTAAACTCCGATCTTCTCCCGCCGATATCCTTCCGCTGTTTGAAACTGCCGCAGCGCAGGTTTTGGTGAATTTGAAGACTAAGGTGGCCGGAGATACTGGTGCTATGGAAGATGCTGCTCCTGGTGATGTACAGATTCTACTTACTTCTAAGGAGGATTCTGTTTCGATGAGATCGCTTGGGGCTCAATACATATCGAAGCTTGTTAAAATTGCTGGGATAACTATTGCTGCATCGAGGACTAAGGCAAAGGCAACATATGTGACCTTGATATGTAAGAATTGTAAGAAAGGGAAGCAAGTTCCGTGTCGGCCAGGACTTGGGGGAGCAGTTGTTCCTCGTTCATGTGATCATGTTCCTCAGCCTGGAGAAGAACCTTGTCCAATAGATCCGTGGCTTATTGTTCCTGACAAGAGCAAGTATGTTGATCAACAAACCTTGAAGCTGCAAGAAAATCCGGAGGATGTTCCAACTGGAGAGCTTCCTAGAAACCTGCTCCTTTCTGTTGATCGACATCTTGTTCAGACAGTAGTTCCTGGCTCAAGATTAACAATCATTGGAATATATAGTATTTTTCAGGCTTCCAACTCCAATACATCTAACAAAGGAGCAGTTGCAGTTAGACAGCCTTATGTTAGGGTTGTAGGAATAGAAGATGCAAATGAAGCCAAGTCTCGAGGTCCCACTGCATTTACAACAGAAGAAATTGAAGAGTTCAAAAAATTTGCAGCTGAGCCTGCTGCATATAAAAATATATGCTCCAAGATTGCTCCATCTATATTTGGGCATGAGGATGTCAAAAAGGCTGTGGCCTGTCTTCTATTTGGAGGGTCAAGAAAGCATTTGCCAGATGGGGTGAGATTAAGAGGTGATATCAATGTGCTACTTCTTGGGGATCCATCTACAGCAAAGTCACAGTTTCTCAAGTTTGTTGAAAAGACCGCTCCTATTGCTGTTTATACTTCTGGAAAAGGCTCATCAGCTGCTGGCCTCACAGCCTCTGTAATCCAAGATAGCAGTACTCGTGAGTTTTATCTTGAAGGAGGAGCCATGGTCTTGGCAGATGGGGGTGTTGTCTGCATTGATGAGTTTGACAAGATGAGACCAGAAGATAGGGTTGCCATTCATGAAGCCATGGAACAGCAAACTATATCCATAGCCAAAGCAGGAATAACAACCGTTCTTAATTCAAGGACTTCTGTTCTAGCTGCTGCCAACCCTCCATCAGGGCGTTATGATGACCTTAAGACTGCACAGGACAACATCGATTTACAGACAACTATTCTTTCTAGGTTTGATTTAATCTTCATAGTGAAAGACATCAGAATGTACGAACAAGATAAGATAATAGCTAGTCATATCATAAAGGTTCATTCATCAGCTAGTGCAACGAGGGGTGAGAATAGGACTCCCATTTCCAAAGAAGAAAATTGGCTGAAGAGGTATTTACAGTATTGTCGAACTGAATGCCACCCCCGTCTATCGGAAGCTGCGGCGAGATTACTGCAAAATAATTATGTGAAAATCAGACAGGATATGAGGCTGCAAGCAAATGAAACTGGAGAAGCTGCTGCAATACCAATTACTGTAAGGCAGCTGGAAGCTATTGTAAGGTTGAGTGAGGCGCTTGCAAAGATGAAACTATCTCATCTTGCTACCGAGGAGAATGTGCAAGAAGCCATAAGGCTTTTCACTGTGTCTACAATGGATGCAGCTAAGTCGGGAATAAACCAACAAATAAATCTCTCAAAAGAAATGGCACAGGAGATACAGCAAGCAGAAAATCAGATAAAGAGAAGAATTGGGATTGGAAACCACATATCAGAAAGAAGACTGATTGATGACCTCGGCAGAATGGGATTGAATGAATCTATTGTAAGAAGAGCTCTTCTAATCATGCACCAGAGAGAAGAGGTAGAGTACAAGCGAGAAAGGCGTGTTGTATTTAGGAAAGCTTAA 2199 0.432 MSGWDEGGVYYSDQAHSWDDGRGEGEATASNHTILQKFKEFIRNFETGNNVFPYRESLLHNPKFLTVDMEDLDSFDPDLPSKLRSSPADILPLFETAAAQVLVNLKTKVAGDTGAMEDAAPGDVQILLTSKEDSVSMRSLGAQYISKLVKIAGITIAASRTKAKATYVTLICKNCKKGKQVPCRPGLGGAVVPRSCDHVPQPGEEPCPIDPWLIVPDKSKYVDQQTLKLQENPEDVPTGELPRNLLLSVDRHLVQTVVPGSRLTIIGIYSIFQASNSNTSNKGAVAVRQPYVRVVGIEDANEAKSRGPTAFTTEEIEEFKKFAAEPAAYKNICSKIAPSIFGHEDVKKAVACLLFGGSRKHLPDGVRLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIQDSSTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYEQDKIIASHIIKVHSSASATRGENRTPISKEENWLKRYLQYCRTECHPRLSEAAARLLQNNYVKIRQDMRLQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHLATEENVQEAIRLFTVSTMDAAKSGINQQINLSKEMAQEIQQAENQIKRRIGIGNHISERRLIDDLGRMGLNESIVRRALLIMHQREEVEYKRERRVVFRKA* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3552 732 SMART mcm 133 649 IPR031327 GO:0003677|GO:0005524|GO:0032508
Tpr4g3552 732 Gene3D - 164 222 - -
Tpr4g3552 732 ProSitePatterns MCM family signature. 437 445 IPR018525 GO:0003677|GO:0005524|GO:0006260
Tpr4g3552 732 ProSiteProfiles MCM family domain profile. 328 534 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr4g3552 732 Pfam MCM P-loop domain 316 538 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr4g3552 732 PRINTS Mini-chromosome maintenance (MCM) protein family signature 369 384 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr4g3552 732 PRINTS Mini-chromosome maintenance (MCM) protein family signature 429 443 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr4g3552 732 PRINTS Mini-chromosome maintenance (MCM) protein family signature 457 470 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr4g3552 732 PRINTS Mini-chromosome maintenance (MCM) protein family signature 481 493 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr4g3552 732 PRINTS Mini-chromosome maintenance (MCM) protein family signature 508 516 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr4g3552 732 Pfam MCM OB domain 137 272 IPR033762 -
Tpr4g3552 732 CDD MCM5 331 647 - -
Tpr4g3552 732 Coils Coil 656 676 - -
Tpr4g3552 732 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 138 153 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Tpr4g3552 732 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 164 176 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Tpr4g3552 732 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 288 300 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Tpr4g3552 732 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 566 581 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Tpr4g3552 732 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 642 659 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Tpr4g3552 732 Gene3D - 29 113 - -
Tpr4g3552 732 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 58 677 IPR031327 GO:0003677|GO:0005524|GO:0032508
Tpr4g3552 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 648 IPR027417 -
Tpr4g3552 732 Pfam MCM AAA-lid domain 558 647 IPR041562 -
Tpr4g3552 732 PANTHER DNA REPLICATION LICENSING FACTOR MCM5 58 677 - -
Tpr4g3552 732 Pfam MCM N-terminal domain 36 107 IPR027925 -
Tpr4g3552 732 Gene3D - 309 670 IPR027417 -
Tpr4g3552 732 Gene3D - 137 272 IPR012340 -
Tpr4g3552 732 SUPERFAMILY Nucleic acid-binding proteins 37 293 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3552 Tpr-Chr4 41356916 41362832 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3552 1 732 Core DNA Replication Machinery Family AT2G07690 77.322 0.0 1169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3552 K02209 - gmx:100779483 1273.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3552 4 41356916 41362832 Tpr4g3552 4 41356916 41362832 ECH