Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3550 ATGGCTGAGGCTTTACTTGGAGTTGCATTTGAGAATTTGATGGCTCTTCTGCAAAATGAATTTTCAACCATTTCTGGAATCAGTTCAAAGGCTCAAAAGCTATCAACCAACTTAAATCTGATCAAGGTTGTTCTTGAAGATGCTGAGAAGAAACAAGTTACAAACTGTTCTATTAAGGTATGGCTACAACAACTCAAAGATGCTGTATATGTGCTCGATGATATTCTTGATGAGTGTTCCATTGAATCCAACCGACTCAAGGGCTCATCTTCTTTAAAACCAAAGAATATCATTTTCCGCCATAACATTGGAAACAGGTTAAAAGAAATTACAAGCAGATTCGATGAAATTGCTGATAGGAAGAACAAGTTTCTTCTACAAGACGGCGTTACTGTTAAGGAAATGACAGTTGAAGTGGCTGAATGGCGTCAAACCAGCTCAATTATTGCTGAACCCAAAGTGTATGGACGAGAAGATGATAAAGAGAAGATTGTCGAGTTTCTTCTTAACCAAGAGAGGGACTCTAACTCCCTTTCCGTCTATCCCATTTTTGGCTTAGGTGGTGTGGGAAAAACAACTCTAGCTCAATTGGTCTACAATGATCAAAGGGTGAGTACCACCAATTTTCATACAAAGATATGGGTTTGTGTTTCTGAAGCTTTCTCGGTCAAGCGGATTCTATGTTCCATTATAGAATCAATAAAAAATGAGAAGTGTGATGCCTTTGATTTAGATGTAATACAAAGAAAGGTACAAGAACTGTTGCAAGGTAAAAGATATTTGCTAGTGTTAGATGACGTGTGGAACAAAAATGAAGAACTTGAATTCGGATTGAGCCAAGAGAAATGGAACCAATTGAAATCAGTGTTGTCCAATGGATCCAAAGGTAGTTCTTGTTTGGTTTCCACCCGTGATGAGGTTGTTGCATCAATCATGGGAACATGCCAAGCTCATCATTTGTCTGGTCTCTCTGAAAATGAATGTTGGTTGCTATTGAAACAATATGCATTTGGAGATGACATAGAAGAACAAGTAGAGCTTGTGGAAATAGGCAAGGATATAGCAAAAAAGTGCGGGGGATTGCCTCTTGCTGCACAAGCATTGGGAGGTTTAATGTGCTCAAGGAGTGGAGAAAAAGAATGGCTTGAAATTAAAGAAAGCAGACTTTGGGATTCATCGAGTGACAATTATATTTTGCCAGCCTTGAGGTTGAGCTACTCTTATTTAACGCCAACCTTAAAGCAATGTTTCACTTTTTGTGCAATTTTCCCCAAAGATACAGAAATCTTGAAGGAAGAATTGATTCATCTTTGGATGGCTCATGGATTTATTTCATCTAGGAAAAATTTGGAGGTTGAAGATGTTGGCAGCATTATTTGGAATGAACTATGCAAAAAATCATTCTTTCAAGACATTAAGATGGCTGAATATTCTGGAGACATTTCTTTCAAGATGCATGATCTTGTTCATGATCTTGCTCAATCAATAATGGGGCAAGAATGTTTGTACTTGGAGTATGCAAACATGACTAGTTTGTCAAAAAGCACACATCACATAAGTGTTCACTCCGATGACTTGTTATCAATCGATGAAGGTGCCTTCAAAAAAGTTGAATCCTTGAGAACATTTTTTCAGTTGAACCGATATACTAAAAAAAAACATCATTGCTTCCCAACAAACCGTTTTCTTCGGGTATTATGCACATCCTTTATCCATGTACCGTCACTAGGGAGTTTAATTCATTTAAGTTTATCTGAAGCTCAAGAGGCCAATTTGATGTGTAAAAAAGACCTTCAAGAATTATGGTTGTCATGGGAAATAACAAGTGGTGAATTTACACAGACCCCTACTTTGAATGTTGAGCAACTATTTGAAGTGCTTCAACCTCACTCAAATCTCAAGAGGTTGAAAATACGTTACTATGAAGGATTATTTTTGCCAAGTTGGATAAGTATTCTTAGTAATTTAGTTGCTCTTCAACTTAAGGATTGCAAGAATTGTGTGCGGCTAATGTCATTTGGTAAACTACAGTCTCTAAAAAAATTGGAATTAATCAATATGATTAATCTAAAATACTTGGATGACGAATGTCACGATGGTATGGAGGTGAGGGTTTTTCCATCTTTGGAGATACTGGTGTTACATGAGTTACCAAACATAGAGGGGTTATTGAAAGTGGAAATAGGGGATGTGTTTCCTTGTCTTTCTAAATTGATAATCAACTCTTGCCCTAAACTTGGACTACCATGTCTACAATCTCTTAACAATCTCTATGTCAAAGGATGTAACAATGAGTTACTAAGGTCAATTTCTACCTTCTGCGGTCTTACCACCCTTACCCTTGTTAGTGGCGATGAAGAAATAACATCCTTCCCAGAGGCGATGTTCTCAAACCTTACTATTCTTCAAACTCTGACTATATTTTATTTTCCAAAATTGAAGGAGTTACCAAATCAACCCTTTAACATAGCTTTGGAGCATCTAGAATTCTCTCATTGTGATGAGCTTGAGTTGTTACCAGAGCAAATTTGGAATAGTCTGCAATCCCTTCGAACCATGTGGATTGGTAATTGTAAAGGATTGAGATGCTTGCCGGAAGGTATTCGACATCTCACTTCTCTTGAGGTTTTGACAATTCATGAATGCCCAACATTAGAGGAACGATGCAAGGAGGGAACCGGGGATGACTGGGACAAGATAGCACATATTCCAAAATTACGCCTTTGGTGA 2730 0.3769 MAEALLGVAFENLMALLQNEFSTISGISSKAQKLSTNLNLIKVVLEDAEKKQVTNCSIKVWLQQLKDAVYVLDDILDECSIESNRLKGSSSLKPKNIIFRHNIGNRLKEITSRFDEIADRKNKFLLQDGVTVKEMTVEVAEWRQTSSIIAEPKVYGREDDKEKIVEFLLNQERDSNSLSVYPIFGLGGVGKTTLAQLVYNDQRVSTTNFHTKIWVCVSEAFSVKRILCSIIESIKNEKCDAFDLDVIQRKVQELLQGKRYLLVLDDVWNKNEELEFGLSQEKWNQLKSVLSNGSKGSSCLVSTRDEVVASIMGTCQAHHLSGLSENECWLLLKQYAFGDDIEEQVELVEIGKDIAKKCGGLPLAAQALGGLMCSRSGEKEWLEIKESRLWDSSSDNYILPALRLSYSYLTPTLKQCFTFCAIFPKDTEILKEELIHLWMAHGFISSRKNLEVEDVGSIIWNELCKKSFFQDIKMAEYSGDISFKMHDLVHDLAQSIMGQECLYLEYANMTSLSKSTHHISVHSDDLLSIDEGAFKKVESLRTFFQLNRYTKKKHHCFPTNRFLRVLCTSFIHVPSLGSLIHLSLSEAQEANLMCKKDLQELWLSWEITSGEFTQTPTLNVEQLFEVLQPHSNLKRLKIRYYEGLFLPSWISILSNLVALQLKDCKNCVRLMSFGKLQSLKKLELINMINLKYLDDECHDGMEVRVFPSLEILVLHELPNIEGLLKVEIGDVFPCLSKLIINSCPKLGLPCLQSLNNLYVKGCNNELLRSISTFCGLTTLTLVSGDEEITSFPEAMFSNLTILQTLTIFYFPKLKELPNQPFNIALEHLEFSHCDELELLPEQIWNSLQSLRTMWIGNCKGLRCLPEGIRHLTSLEVLTIHECPTLEERCKEGTGDDWDKIAHIPKLRLW* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3550 909 PRINTS Disease resistance protein signature 180 195 - -
Tpr4g3550 909 PRINTS Disease resistance protein signature 254 268 - -
Tpr4g3550 909 PRINTS Disease resistance protein signature 358 372 - -
Tpr4g3550 909 PRINTS Disease resistance protein signature 869 885 - -
Tpr4g3550 909 CDD RX-CC_like 2 119 IPR038005 -
Tpr4g3550 909 SUPERFAMILY L domain-like 484 757 - -
Tpr4g3550 909 Pfam Rx N-terminal domain 6 99 IPR041118 -
Tpr4g3550 909 Gene3D - 412 495 IPR036388 -
Tpr4g3550 909 PANTHER DISEASE RESISTANCE PROTEIN RP 29 582 IPR044974 GO:0006952
Tpr4g3550 909 PANTHER DISEASE RESISTANCE PROTEIN RP 585 886 IPR044974 GO:0006952
Tpr4g3550 909 Pfam NB-ARC domain 157 406 IPR002182 GO:0043531
Tpr4g3550 909 PANTHER OS05G0414200 PROTEIN 585 886 - -
Tpr4g3550 909 PANTHER OS05G0414200 PROTEIN 29 582 - -
Tpr4g3550 909 Coils Coil 31 51 - -
Tpr4g3550 909 Gene3D - 322 410 IPR042197 -
Tpr4g3550 909 Gene3D Ribonuclease Inhibitor 749 892 IPR032675 -
Tpr4g3550 909 Gene3D Ribonuclease Inhibitor 500 748 IPR032675 -
Tpr4g3550 909 SUPERFAMILY RNI-like 705 886 - -
Tpr4g3550 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 420 IPR027417 -
Tpr4g3550 909 Gene3D - 6 121 - -
Tpr4g3550 909 Gene3D - 137 317 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3550 Tpr-Chr4 41346623 41350684 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3550 183 886 WRKY Transcription Factor Family AT5G45050 23.151 7.29e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3550 - - mtr:MTR_5g071220 907.901