Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3546 ATGTTGTTTCCCAAACATTTTGCTATCTTCTTTCTCTTCCTCTCTCTCATTGCTGCAGCAGACACCACTTCCTGGATCAAAGCAGGTTATCACTATTCCGGCAATGAAAATTCAGCTTCAACAATAAAATCAATACTTTTCACACACCTCTTATGTGCTTTTGCTTTTATAAACTCCACAAATTACAACATCTTCATAAACTCTTCTGAGCAACACAAATTCTCCACTTTCACCAACACAGTAAAGCTTCAAAATCCATCTGTTACAACTCTTCTATCAATCTACAATGGAAGAGAAAACTCTTCACTTTTTGACTCAATGCTAAACCAATCTTCTTATAGAAAATCTTTCATTGATTCTTCCATTAATACAGCAAGAAAATATGAATTTCAAGGCATAGACCTTTGTGGTGTCTTACCAAAACAAGGTAAAGAACTTGAAAATTTGGCAACCCTTTTGAAGGAATTGCGAATCGCGGTAACTTATGATGCAAGAAAGACTAAAAAGCCAGAGTTAGTTTTAGTGATGGCAGGTTATTATATCAAAGCTTCAGATTCCTTTAATTACCCTTTTGAATCAATGCAAAAGAATTTAGATTGGGTTCATTTTGTTGCATATGATTATTATCTTCCTACAAGGGACAGTGTCACAGGTTTTCATGCAGCTTTGTATGGTTTATCTGGTTGGGATAATACTGATTCTGGTATCAAAGAGTGGAGAAAAAGAGGGTTTTCTTCTAACAAACTTGTTATTGGTTTGCCTTATCATGGATATGCATGGACCCTTGCGAAACGAGGTGAAGGTGGTGTTGGAAAACCAGCTTCTGATCCTGCTGTTACAATGGATGGTGCAATGGGTTATAAGTTGATAAAAAGTTATATTAGAAGCTTTGGTGATGGAGTAGTTGCATGTTATAATGATACTTTTGTGGTGAATCATTTCACAGTTGCATCCACTGAGTGGATTAATTTTGATGATGTGGAAGCTATTAAAGAAAAAGTTTCTTATGCAAAGAAAAATGGATTACTTGGTTACAATGTTTTCCAAGTTGGGAATGATGACAATTGGGTCCTTTCCGAGGCAGCTCACGAAGTATATGAAGATCATCATAACAGAAGGTTGCTTATAGTTGTTCTGCTTACTACTTTGACTACTGCACTTCTCTTAGGAATACTAGTATTTTTCTACTACCACCAAGTGAGCACTATTACAAGAATGATATACAAACTGAGGATATATTTATCAGCAGCTGAAGAAGATCTCAATGGAAGTGGTTCTGATTTAATAGTATTTAGTTATCTCGCAATTAAAGTAGCAACAGATAACTTCTCAGAAGAAAATAAGTTAGGAGAGGGTGGATTTGGTGCTGTGTACAAGGGAAAATTACGGAAAGGACAGGAAATAGCTGTCAAAAGACTGTCAGAAACCTCAAATCAAGGACTTGAAGAGTTCAAAAATGAGATCGCGCTTACAGCAAGACTACAACATGTGAATTTAGTTAGACTTTTGGGTTACTGCACAAAAAAGAATGAGAAGCTTCTCATCTATGAATATCTCCCAAATAAAAGCTTAGATCATTTTCTCCTAGATCCAAGCAAATCAATTCTTCTAGATTGGAAGAAGCGTGTGAATATCATCGAAGGGATTACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTCATTATAATCCACCGCGATCTTAAAGCTAGTAATGTTTTATTAGACCATGAGATGAATCCTAAGATATCAGATTTTGGTATGGCTAGACTCTTCGGAAGATATGAACTTGAAGCAAACACAAGCAGGATCGTGGGAACATATGGGTACGTCCCCCCTGAGTATGTCAGAAAAGGCATATACTCACCCAAGTACGACGTTTATAGTTTTGGAGTCCTTCTCTTGCAAATCATAAGTGGAAAGAGAACTTCACGATATTACGGCCTACATGAAAATATGAATCTTTTAGAATACGCATATGTGCTGTGGATGGAAGGAAGAGGTGTGGAGTTTTTTGGCCCTTCATTGGATGATTCAATATCACATTGTAAAATCATGAGATGCATGCAGGTAGCTCTTTTGTGCGTTCAAGAAAACTCAGTAGATAGACCTTCCATGTTAGAAATTGATTCACTGCTCAAGAATGAAAGTGCAGATGTTGGTTCACCCAAAGTACCCGCGTTTTCGATGAAAAAACATGACAATGATAAGGGAGATACAACTAACTCCGAGTTCGAATTTCGTTCAATCAATGATGTTACAATTTCTCAGATGGTACCAAGATAA 2289 0.367 MLFPKHFAIFFLFLSLIAAADTTSWIKAGYHYSGNENSASTIKSILFTHLLCAFAFINSTNYNIFINSSEQHKFSTFTNTVKLQNPSVTTLLSIYNGRENSSLFDSMLNQSSYRKSFIDSSINTARKYEFQGIDLCGVLPKQGKELENLATLLKELRIAVTYDARKTKKPELVLVMAGYYIKASDSFNYPFESMQKNLDWVHFVAYDYYLPTRDSVTGFHAALYGLSGWDNTDSGIKEWRKRGFSSNKLVIGLPYHGYAWTLAKRGEGGVGKPASDPAVTMDGAMGYKLIKSYIRSFGDGVVACYNDTFVVNHFTVASTEWINFDDVEAIKEKVSYAKKNGLLGYNVFQVGNDDNWVLSEAAHEVYEDHHNRRLLIVVLLTTLTTALLLGILVFFYYHQVSTITRMIYKLRIYLSAAEEDLNGSGSDLIVFSYLAIKVATDNFSEENKLGEGGFGAVYKGKLRKGQEIAVKRLSETSNQGLEEFKNEIALTARLQHVNLVRLLGYCTKKNEKLLIYEYLPNKSLDHFLLDPSKSILLDWKKRVNIIEGITQGLLYLQEYSNFIIIHRDLKASNVLLDHEMNPKISDFGMARLFGRYELEANTSRIVGTYGYVPPEYVRKGIYSPKYDVYSFGVLLLQIISGKRTSRYYGLHENMNLLEYAYVLWMEGRGVEFFGPSLDDSISHCKIMRCMQVALLCVQENSVDRPSMLEIDSLLKNESADVGSPKVPAFSMKKHDNDKGDTTNSEFEFRSINDVTISQMVPR* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3546 762 SUPERFAMILY (Trans)glycosidases 29 354 IPR017853 -
Tpr4g3546 762 ProSitePatterns Protein kinases ATP-binding region signature. 449 471 IPR017441 GO:0005524
Tpr4g3546 762 ProSiteProfiles Protein kinase domain profile. 443 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3546 762 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 18 758 - -
Tpr4g3546 762 Gene3D Phosphorylase Kinase; domain 1 410 518 - -
Tpr4g3546 762 Gene3D Glycosidases 41 355 - -
Tpr4g3546 762 SMART serkin_6 443 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3546 762 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 25 369 IPR001223 GO:0005975
Tpr4g3546 762 Pfam Glycosyl hydrolases family 18 33 353 IPR001223 GO:0005975
Tpr4g3546 762 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 18 758 - -
Tpr4g3546 762 Gene3D - 255 324 IPR029070 -
Tpr4g3546 762 SMART 2g34 25 353 IPR011583 GO:0008061
Tpr4g3546 762 SUPERFAMILY Protein kinase-like (PK-like) 426 718 IPR011009 -
Tpr4g3546 762 ProSitePatterns Serine/Threonine protein kinases active-site signature. 564 576 IPR008271 GO:0004672|GO:0006468
Tpr4g3546 762 Pfam Protein kinase domain 444 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3546 762 CDD STKc_IRAK 449 716 - -
Tpr4g3546 762 Gene3D Transferase(Phosphotransferase) domain 1 519 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3546 Tpr-Chr4 41323516 41327305 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3546 431 762 Receptor kinase-like Gene Family AT4G11530 51.039 1.75e-114 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr4g3546 Glyco_hydro_18 2.3e-51 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3546 - - aprc:113847882 1136.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3546 4 41323516 41327305 Tpr4g3546 4 41323516 41327305 ECH