Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3545 ATGCAGAAGAATTTGGATTGGGTTCATTTTATTGCATATGATTATGATCTTCCTAAAGTGGAGAATATTACGGGTTTTCATGCTGCTTTGTATGGTTTATCTGGTTGGGATAATACTGATTCAGGTATCAAAGAGTGGAGAAAAAGAGGGTTTTCTTCTAACAAACTTGTTATTGGTTTGCCTTATCATGGATATGCATGGACACTTGCGAAACGAGGTGAAGGTGGTGCTGGAAAACTAGCATCTGGTCCTGCTGTTACAGTTGAGGGTGCAATGGGTTATAAGTTTATAAAAATTTATATTAGAAGCTTTGGTGATGGAGTAGTTTCATGTTATAATGATACTTTTGTGGTGAATTATTTCACAGCTACTTCCACTTATTGGATTAATTTTGATGATGTGGAAGCTATTAAAGAAAAAGTTTCTTATGCAAAGAAAAATGGATTACTTGGTTACAATGTTTTCCAAGTTGGGAATGATTACAATTGGGTCCTTTCCAAGGCAGCTCATGAAGTATATGAAGATCATGATAACAAAAGGTTGCTGATAATTGTTCTGGTTACTACTCTGACTACTGCATTTCTCTTAGGAGTAATAGTATTTTGCTACTACCACCAAGGTAAGAGTATAATAAACTTTCACCTTAGACCTCACACTGTTTTGGCTGGAACAGTGACCACTATTACCAGAATGATATACAAACTGAGGATATATTTATCAGCAGCTGAAGAAGATCTTGATGAAAATTGTTCTGATTTAATAGTATTTAGTTATCTCGCAATTAAAGTAGCAACAGATAACTTCTCAGAAGAAAATAAGCTAGGAGAGGGGGGATTTGGTGCAGTGTACAAGGGAAAATTAAGGAAGGGACAGGAAATAACTGTCAAAAGACTATCAGAAACCTCAAATCAAGGACTCGATGAGTTCAAAAATGAGATCGCGCTTACAGCAAGACTACAACATGTGAATTTAGTTAGACTTTTGGGTTACTGCACAAAAAAGAATGAGAAGCTTCTCATCTATGAATATCTCCCAAACAAAAGCTTAGATCATTTTCTCCTAGATCCAAGCAAATCAATTCTTCTAGATTGGAAGAAGCGTGTGAATATCATCGAAGGGATGACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTCATTATAATCCACCGCGATCTTAAAGCTAGTAATGTTTTATTAGACCATGAGATGAATCCTAAGATATCAGATTTTGGTATGGCTAAAATTTTCGGGAAATATGAACTTGAAGCTAACACAAGCAGAATCGTGGGAACATAG 1302 0.3579 MQKNLDWVHFIAYDYDLPKVENITGFHAALYGLSGWDNTDSGIKEWRKRGFSSNKLVIGLPYHGYAWTLAKRGEGGAGKLASGPAVTVEGAMGYKFIKIYIRSFGDGVVSCYNDTFVVNYFTATSTYWINFDDVEAIKEKVSYAKKNGLLGYNVFQVGNDYNWVLSKAAHEVYEDHDNKRLLIIVLVTTLTTAFLLGVIVFCYYHQGKSIINFHLRPHTVLAGTVTTITRMIYKLRIYLSAAEEDLDENCSDLIVFSYLAIKVATDNFSEENKLGEGGFGAVYKGKLRKGQEITVKRLSETSNQGLDEFKNEIALTARLQHVNLVRLLGYCTKKNEKLLIYEYLPNKSLDHFLLDPSKSILLDWKKRVNIIEGMTQGLLYLQEYSNFIIIHRDLKASNVLLDHEMNPKISDFGMAKIFGKYELEANTSRIVGT* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3545 433 SMART serkin_6 268 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3545 433 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 1 176 IPR001223 GO:0005975
Tpr4g3545 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 389 401 IPR008271 GO:0004672|GO:0006468
Tpr4g3545 433 Gene3D Transferase(Phosphotransferase) domain 1 344 433 - -
Tpr4g3545 433 SUPERFAMILY Protein kinase-like (PK-like) 252 433 IPR011009 -
Tpr4g3545 433 ProSiteProfiles Protein kinase domain profile. 268 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3545 433 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 38 433 - -
Tpr4g3545 433 Gene3D Glycosidases 1 161 - -
Tpr4g3545 433 SUPERFAMILY (Trans)glycosidases 1 176 IPR017853 -
Tpr4g3545 433 Pfam Glycosyl hydrolases family 18 2 160 IPR001223 GO:0005975
Tpr4g3545 433 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 38 433 - -
Tpr4g3545 433 Gene3D - 62 131 IPR029070 -
Tpr4g3545 433 Pfam Protein tyrosine and serine/threonine kinase 271 418 IPR001245 GO:0004672|GO:0006468
Tpr4g3545 433 Gene3D Phosphorylase Kinase; domain 1 234 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3545 Tpr-Chr4 41320446 41322780 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3545 239 433 Receptor kinase-like Gene Family AT4G05200 58.081 3.70e-73 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr4g3545 Pkinase 6.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3545 - - aprc:113847882 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3545 4 41320446 41322780 Tpr4g3545 4 41320446 41322780 ECH