Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3542 ATGTTGTTTCCCAAACATTTTGCTATCTTCTTTCTCTTCCTCTCTCTCATTGCTGCTGCAGACACCACTTCTTGGATCAGAGCTGGTTATTACTATTCTGGCAGTGAAATTTCATCTTCAGACATAAAATCAACACTCTTCACACACCTCTTATGTGCTTTTGCTTTTATAAACTCCACAAATTACAACATCTTCATAAACTCTTCTGAGCAACACAAATTCTCCACTTTCACCAACACAGTAAAGCTTCAAAATCCATCTGTTACAACTCTTCTATCAATCTACAATGGAAGAGAAAACTCTTCACTTTTTGACTCAATGCTAAACCAATCTTCTTATAGAAAATCTTTCATTGATTCTTCCATTAATACAGCAAGAAAATATGAATTTCAAGGCATAGACCTTTGTGGTGTCTTACCAAAACAAGGTAAAGAACTTGCAAATTTGGCAACCCTTTTAAAGGAATTGCGAATCGCGATAACTTATGATGCAAGAAAGACTAAAAAGCCAGAGTTAGTTTTAGTGATGGCAGGTTATTATATCAAAGCTTCAGATTCTGTTAGTTACCCTTTTGAATCAATGCAGAAGAATTTAGATTGGGTTCATTTTGTTGCATATGATTATTATCTTCCTAGAAGGGACAGTGTCACAGGTTTTCATGCTGCTTTGTATGGTTTATCTGGTTGGGATAATACTGATTCTGGTATCAAAGAGTGGAGAAAAAGAGGGTTTTCTTCTAACAAACTTGTAATCGGTTTACCTTATCATGGATTTGCATGGACACCTGTGAAACAAGGTGAAGGTGGTGTTGGAAAATCAGCTTCTGGACCTGCTATTACATTGGATGGTTCAATGGCTTATAAATTGATTAAAAGTTATATTAGAAGCTTTGGTGATGGAGTGGTTTCACGTTATAATGATACTTTTGTGGTGAATTACTTCACAGTTGCATCCACTACTTGGGTTAATTTTGATGATGTGGAAGTTATTAAAGAAAAAGTTTCTTATGCAAAGAAAAATGGATTACTTGGTTATAATGTTTTCCAAGTTGGGAATGATGACAATTGGGTCCTTTCAAAGGCAGCTTATGAAGTAGATGAAGATCATCATAACAGAAAGTTGCTGATAATTGTTCTGCTTACTACTTTGACTACTGCACTTCTCTTAGGAATACTAGTATTTTGCTACTACCATCAAGGAACAGTGAGCACTATTACAAGAATGATATACAAACTGAGGATATATTTATCAGCAGCTGAAGAAGATCTCAATGGAATTGGTTCTGATTTAATAGTATTTAGTTATCTCGCAATTAAAGTAGCAACAGATAACTTCTCAGAAGAAAATAAGTTAGGAGAGGGTGGATTTGGTGCTGTGTACAAGGGAAAATTACGGAAGGGACAGGAAATAGCGGTCAAAAGACTATCAGAAACCTCAAATCAAGGACTTGAAGAGTTCAAAAATGAGATCGCGCTTACAGCAAGACTACAACATGTGAATTTAGTTAGACTTTTGGGTTACTGCACAAAAAAGAATGAGAAGCTTCTCATCTATGAATATCTCCCAAATAAAAGCTTAGATCATTTTCTCCTAGATCCAAGCAAATCAATTCTTCTAGATTGGAAGAAGCGTGTGAATATCATCGAAGGGATTACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTCATTATAATCCACCGAGATCTTAAAGCTAGTAATGTTTTATTAGACCATGAGATGAATCCTAAGATATCAGATTTTGGTATGGCTAGACTTTTCGGAAGATATGAACTTGAAGCAAACACAAGCAGGATCGTGGGAACATATGGATATGTACCCCCTGAGTATGTCAGAAAAGGCATATACTCGCCCAAGTATGATGTTTATAGTTTTGGAGTCCTTCTCTTACAAATCATAAGTGGAAAGAGAACTTCACGTTATTATGGCCCACATGAAAATATGAACCTTTTGGAATACGCATATGTGTTGTGGATGGAAGGAAGAGGTGCGGAGTTTTTCGACCCTTCATTAGATGATACAACATCACCTTGCAAAATAATGCGATGTATGCAGGTAGCTCTTTTGTGTGTTCAAGAGAAGTCAGCGGACAGACCTTCCATGTTAGAAGTTGATTCACTGCTCAAGAATGAAGGTGCAGATGTTGGTATACCTAATGTGCCCGCTTTTTCGATGAAAAAACAGGAAAATGATAAGGGAGATACTACTTCTAACTCTGAGTTCAAATTTTCTTCAATCAATGATGTAACAATATCTCAGATGCTAACTTTTCAGCTATCAGCTATCAGCTATCTTATAGCTTATGCCCTCTTATTTTTACCAAAACAGAGCGACAATACAATGTTTTCAAAACATTTTGCTACTATCTTCTTCCTTGTCTTCCTATCTCTAACATCTCACTCTTTTGCAGGAGACACCACTTCCTGGATCAAAGCAGGTTATCACTATTCCGGCAATGAAAATTCAGCTTCAACAATAAAATCAACACTTTTCACACACCTCTTATGTGCTTTTGCTTTTATAAACTCCACAAATTACAACCTCTTCATAAACTCTTCTGAGGAACAAAAATTCTCCACCTTCACCAACACAGTAAAACTCCAAAATCCGTCTGTTACTACTCTTCTATCGATCTACGCAGGAACAGAAAACTCTACAGTTTTCAACTCAATCATAAACAATTCTTCTCACAGGAAAACTTTCATTGATTCTTCCATCAATACAGCAAGAAAATATGAATTTCAAGGCATAGATCTTTGTGGAGTCTTACCAATGCAGGGTAAAGAACTTGCAAATTTGGCAACCCTTTTGAAGGAATTGCGAATCGCGATAACTTATGATGCAAGAAAGACTAAAAACCCAGAGTTAGTATTGGTGATGGCAGGTTATTATATCAAAGCTTCAGATTCCGTTAGTTACCCTTTTGAATCAATGCAGAAGAATTTGGATTGGGTTCATTTTATTGCATATGATTATGATCTTCCTAAAGTGGAGAATATTACGGGTTTTCATGCTGCTTTGTATGGTTTATCTGGTTGGGATAATACTGATTCAGGTATCAAAGAGTGGAGAAAAAGAGGGTTTTCTTCTAACAAACTTGTTATTGGTTTGCCTTATCATGGATATGCATGGACCCTTGCGAAACGAGGTGAAGGTGGTGTTGGAAAACCAGCTTCTGATCCTGCTGTTACAATGGATGGTGCAATGGGTTATAAGTTGATAAAAAGTTATATTAGAAGCTTTGGTGATGGAGTAGTTGCATGTTATAATGATACTTTTGTGGTGAATCATTTCACAGTTGCATCCACTGAGTGGATTAATTTTGATGATGTGGAAGCTATTAAAGAAAAAGTTTCTTATGCAAAGAAAAATGGATTACTTGGTTACAATGTTTTCCAAGTTGGGAATGATGACAATTGGGTCCTTTCCGAGGCAGCTCACGAAGTATATGAAGATCATCATAACAGAAGGTTGCTTATAGTTGTTCTGCTTACTACTTTGACTACTGCACTTCTCTTAGGAATACTAGTATTTTTCTACTACCACCAAGGAACAGTGAGCACTATTACAAGAATGATATACAAACTGAGGATATATTTATCAGCAGCTGAAGAAGATCTCAATGGAAGTGGTTCTGATTTAATAGTATTTAGTTATCTCGCAATTAAAGTAGCAACAGATAACTTCTCAGAAGAAAATAAGTTAGGAGAGGGTGGATTTGGTGCTGTGTACAAGGGAAAATTACGGAAAGGACAGGAAATAGCTGTCAAAAGACTGTCAGAAACCTCAAATCAAGGACTTGAAGAGTTCAAAAATGAGATCGCGCTTACAGCAAGACTACAACATGTGAATTTAGTTAGACTTTTGGGTTACTGCACAAAAAAGAATGAGAAGCTTCTCATCTATGAATATCTCCCAAATAAAAGCTTAGATCATTTTCTCCTAGATCCAAGCAAATCAATTCTTCTAGATTGGAAGAAGCGTGTGAATATCATCGAAGGGATTACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTCATTATAATCCACCGCGATCTTAAAGCTAGTAATGTTTTATTAGACCATGAGATGAATCCTAAGATATCAGATTTTGGTATGGCTAGACTCTTCGGAAGATATGAACTTGAAGCAAACACAAGCAGGATCGTGGGAACATATGGGTACGTCCCCCCTGAGTATGTCAGAAAAGGCATATACTCACCCAAGTACGACGTTTATAGTTTTGGAGTCCTTCTCTTGCAAATCATAAGTGGAAAGAGAACTTCACGATATTACGGCCTACATGAAAATATGAATCTTTTAGAATACGCATATGTGCTGTGGATGGAAGGAAGAGGTGTGGAGTTTTTTGGCCCTTCATTGGATGATTCAATATCACATTGTAAAATCATGAGATGCATGCAGGTAGCTCTTTTGTGCGTTCAAGAAAACTCAGTAGATAGACCTTCCATGTTAGAAATTGATTCACTGCTCAAGAATGAAAGTGCAGATGTTGGTTCACCCAAAGTACCCGCGTTTTCGATGAAAAAACATGACAATGATAAGGGAGATACAACTAACTCCGAGTTCGAATTTCGTTCAATCAATGATGTTACAATTTCTCAGATGGTACCAAGATAA 4671 0.3663 MLFPKHFAIFFLFLSLIAAADTTSWIRAGYYYSGSEISSSDIKSTLFTHLLCAFAFINSTNYNIFINSSEQHKFSTFTNTVKLQNPSVTTLLSIYNGRENSSLFDSMLNQSSYRKSFIDSSINTARKYEFQGIDLCGVLPKQGKELANLATLLKELRIAITYDARKTKKPELVLVMAGYYIKASDSVSYPFESMQKNLDWVHFVAYDYYLPRRDSVTGFHAALYGLSGWDNTDSGIKEWRKRGFSSNKLVIGLPYHGFAWTPVKQGEGGVGKSASGPAITLDGSMAYKLIKSYIRSFGDGVVSRYNDTFVVNYFTVASTTWVNFDDVEVIKEKVSYAKKNGLLGYNVFQVGNDDNWVLSKAAYEVDEDHHNRKLLIIVLLTTLTTALLLGILVFCYYHQGTVSTITRMIYKLRIYLSAAEEDLNGIGSDLIVFSYLAIKVATDNFSEENKLGEGGFGAVYKGKLRKGQEIAVKRLSETSNQGLEEFKNEIALTARLQHVNLVRLLGYCTKKNEKLLIYEYLPNKSLDHFLLDPSKSILLDWKKRVNIIEGITQGLLYLQEYSNFIIIHRDLKASNVLLDHEMNPKISDFGMARLFGRYELEANTSRIVGTYGYVPPEYVRKGIYSPKYDVYSFGVLLLQIISGKRTSRYYGPHENMNLLEYAYVLWMEGRGAEFFDPSLDDTTSPCKIMRCMQVALLCVQEKSADRPSMLEVDSLLKNEGADVGIPNVPAFSMKKQENDKGDTTSNSEFKFSSINDVTISQMLTFQLSAISYLIAYALLFLPKQSDNTMFSKHFATIFFLVFLSLTSHSFAGDTTSWIKAGYHYSGNENSASTIKSTLFTHLLCAFAFINSTNYNLFINSSEEQKFSTFTNTVKLQNPSVTTLLSIYAGTENSTVFNSIINNSSHRKTFIDSSINTARKYEFQGIDLCGVLPMQGKELANLATLLKELRIAITYDARKTKNPELVLVMAGYYIKASDSVSYPFESMQKNLDWVHFIAYDYDLPKVENITGFHAALYGLSGWDNTDSGIKEWRKRGFSSNKLVIGLPYHGYAWTLAKRGEGGVGKPASDPAVTMDGAMGYKLIKSYIRSFGDGVVACYNDTFVVNHFTVASTEWINFDDVEAIKEKVSYAKKNGLLGYNVFQVGNDDNWVLSEAAHEVYEDHHNRRLLIVVLLTTLTTALLLGILVFFYYHQGTVSTITRMIYKLRIYLSAAEEDLNGSGSDLIVFSYLAIKVATDNFSEENKLGEGGFGAVYKGKLRKGQEIAVKRLSETSNQGLEEFKNEIALTARLQHVNLVRLLGYCTKKNEKLLIYEYLPNKSLDHFLLDPSKSILLDWKKRVNIIEGITQGLLYLQEYSNFIIIHRDLKASNVLLDHEMNPKISDFGMARLFGRYELEANTSRIVGTYGYVPPEYVRKGIYSPKYDVYSFGVLLLQIISGKRTSRYYGLHENMNLLEYAYVLWMEGRGVEFFGPSLDDSISHCKIMRCMQVALLCVQENSVDRPSMLEIDSLLKNESADVGSPKVPAFSMKKHDNDKGDTTNSEFEFRSINDVTISQMVPR* 1557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3542 1556 Gene3D Phosphorylase Kinase; domain 1 411 520 - -
Tpr4g3542 1556 Gene3D Phosphorylase Kinase; domain 1 1204 1312 - -
Tpr4g3542 1556 SUPERFAMILY Protein kinase-like (PK-like) 429 714 IPR011009 -
Tpr4g3542 1556 ProSitePatterns Protein kinases ATP-binding region signature. 1243 1265 IPR017441 GO:0005524
Tpr4g3542 1556 SMART 2g34 817 1145 IPR011583 GO:0008061
Tpr4g3542 1556 SMART 2g34 25 353 IPR011583 GO:0008061
Tpr4g3542 1556 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 18 761 - -
Tpr4g3542 1556 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 797 1552 - -
Tpr4g3542 1556 CDD STKc_IRAK 451 718 - -
Tpr4g3542 1556 Gene3D Transferase(Phosphotransferase) domain 1 521 723 - -
Tpr4g3542 1556 Gene3D Transferase(Phosphotransferase) domain 1 1313 1519 - -
Tpr4g3542 1556 ProSiteProfiles Protein kinase domain profile. 445 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3542 1556 Gene3D - 255 324 IPR029070 -
Tpr4g3542 1556 Gene3D - 1047 1116 IPR029070 -
Tpr4g3542 1556 CDD STKc_IRAK 1243 1510 - -
Tpr4g3542 1556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 566 578 IPR008271 GO:0004672|GO:0006468
Tpr4g3542 1556 SUPERFAMILY Protein kinase-like (PK-like) 1220 1511 IPR011009 -
Tpr4g3542 1556 SUPERFAMILY (Trans)glycosidases 28 354 IPR017853 -
Tpr4g3542 1556 Pfam Protein kinase domain 446 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3542 1556 Pfam Protein kinase domain 1238 1440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3542 1556 ProSiteProfiles Protein kinase domain profile. 1237 1508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3542 1556 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 808 1161 IPR001223 GO:0005975
Tpr4g3542 1556 ProSitePatterns Protein kinases ATP-binding region signature. 451 473 IPR017441 GO:0005524
Tpr4g3542 1556 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 18 761 - -
Tpr4g3542 1556 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 797 1552 - -
Tpr4g3542 1556 SMART serkin_6 445 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3542 1556 SMART serkin_6 1237 1508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3542 1556 Gene3D Glycosidases 40 355 - -
Tpr4g3542 1556 Gene3D Glycosidases 833 1147 - -
Tpr4g3542 1556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1358 1370 IPR008271 GO:0004672|GO:0006468
Tpr4g3542 1556 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 25 369 IPR001223 GO:0005975
Tpr4g3542 1556 Pfam Glycosyl hydrolases family 18 30 353 IPR001223 GO:0005975
Tpr4g3542 1556 Pfam Glycosyl hydrolases family 18 824 1145 IPR001223 GO:0005975
Tpr4g3542 1556 SUPERFAMILY (Trans)glycosidases 821 1146 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3542 Tpr-Chr4 41306464 41315737 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3542 433 761 Receptor kinase-like Gene Family AT4G11530 51.051 2.73e-106 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr4g3542 Glyco_hydro_18 7.5e-50 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3542 - - minc:123200285 1425.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3542 4 41306464 41315737 Tpr4g3542 4 41306464 41315737 ECH