Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3539 ATGGACGCAACATCGGAAGCTATGAATCAATTCGATGAATCGATGAAGAAACAAATAGCATTACTTTTGAAGGTTGTACTTTTAAATAAATCATTGAAAGAGGATAATGTTCCTTGCGAAATTGATGAGGGTCTCTATTTGGGTTCGGTTGGTTCTGCGGCGAACAAGGTTGCTTTGAAAAATGTTAATGTTACTCATATTTTGACTGTGGCTGGGAAGATTGCACCTGCTCATCCTGCGGATTTCGTCTATAAAGTTATAGATGTTGCTGACAAAGAGGATACAAACTTAAAACAATACTTCAACGAGTGTTTTGATTTTATTGACGAAGCCAAAAGAAATGGTGGATATGTTTTGGTTCACTGTTATGCTGGAAGATCAAGGAGTGTGACTATCATTGTGGCATATCTGATGAAGTCTCGTGGAATGAGCTTATCTGAAGCTCTGGAACATGTAAAGAATAAAAGACCACGAGCAGCTCCAAATCGCGGTTTCATTCGTCAGCTGGAAGACTTTGAGAAATCTCTTCAAGTGGATAGTGCTCAGTATATACCCAAGCTGGGAGTTTATTAA 573 0.3874 MDATSEAMNQFDESMKKQIALLLKVVLLNKSLKEDNVPCEIDEGLYLGSVGSAANKVALKNVNVTHILTVAGKIAPAHPADFVYKVIDVADKEDTNLKQYFNECFDFIDEAKRNGGYVLVHCYAGRSRSVTIIVAYLMKSRGMSLSEALEHVKNKRPRAAPNRGFIRQLEDFEKSLQVDSAQYIPKLGVY* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3539 190 ProSiteProfiles Dual specificity protein phosphatase domain profile. 37 178 IPR020422 GO:0006470|GO:0008138
Tpr4g3539 190 CDD DSP 38 171 - -
Tpr4g3539 190 Gene3D Protein tyrosine phosphatase superfamily 31 183 IPR029021 -
Tpr4g3539 190 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 4 179 - -
Tpr4g3539 190 Pfam Dual specificity phosphatase, catalytic domain 45 174 IPR000340 GO:0008138|GO:0016311
Tpr4g3539 190 PANTHER BNAA01G23680D PROTEIN 4 179 - -
Tpr4g3539 190 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 35 177 IPR029021 -
Tpr4g3539 190 SMART dsp_5 37 175 IPR020422 GO:0006470|GO:0008138
Tpr4g3539 190 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 99 157 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3539 Tpr-Chr4 41273572 41277778 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3539 40 177 Protein tyrosine phosphatase (PTP) family AT3G06110 58.696 1.46e-57 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3539 - - aprc:113847529 267.7