Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3536 ATGAAAGTGAAACAAGGATTAAAAATTAGCAAGTGGTGTTCTATTTCTGAGGAAAGAACTGGATCTGGTGGAGTTGACACAAACATTGTCTGTCCTGTCTCTGTGTCTGTGACTGTGTGTGCTTCAGTTGAGATGGGTGGTTCATGGAGTAACGGTAATAACAGGAACACAAGAAGAAGAAACAGTTACCATGAACACTATCCACCACCACCTCCTCCAGCATACTATTATCATTACTCTTCTCAGCCTCTCATGCCACAACCACCTCAAGGTTACTTTCCTCCTCCTCCTCTTCCTCATCAGTACTACTCAAATGGATACACTCCTCCACTTCATAATCATCACCCTCCTTTTCATGCAACAACAAATACTCAACCATCTGATGTAGATTTAAATTTAAATGTTGTTCAACCTCTACCACTTCCACCACCACCTTCTTATGTTGACCATGAAACCACTAAGAAAGTAAGGAATGATGTCAACTTGCATAAAAACACTCTCCAGCTCCATCTTGATCCCAACAATCCCCATCACCACTTGATTTCCTTCGATTTCGATGCCCTTTTCGATGGCAGAATTACGATCTTCTACTTAGCCAAAGAAGAAGAACATAAATGTAGGTTTGTTCCTCTATTTCCCGAAGCATTTGAGCCGATCACGTTTCCATTCGAGAAAGGAGTTGGCCAGAAATTTTGTCAGCCTTCAGGAACAGGCATTGATTTAGGTTTCTTTGAGTTGGATGATCTTTCAAACCCTTCACCTGAAGAAGATGTATTTCCCCTTGTAATATGTGCCGAAACAACCCCTTTGGAAGATCATGAAACTCCTGCTAGTTCCTTACTAGATGCATCCCCTCACATGCAAATAACTCAAGCTGTCTTGGAGAAAATCGATGGTAATGCTCCTTTCCAGGTTAAAGTTATTAGGCAGATTCTATGGATCGATCAAGTTCGTTATGAGCTCAGAGAGTTATATGGAATTGGTAACTCAACAGCACCTGATTTTGATCGTAATGATCCTGGAAAGGAGTGTGTAATATGCATGACTGAACCCAAGGATACTGCTGTCTTACCTTGCCGACACATGTGTATGTGCAGTGAGTGTGCAAAAGCTTTGCTGTTACAATCAGATAAATGCCCTATATGCCGCCAAGCTATCGAGGAGCTTATAGAGATCAAGATAAACAATGGCGACGACCAATGA 1203 0.4165 MKVKQGLKISKWCSISEERTGSGGVDTNIVCPVSVSVTVCASVEMGGSWSNGNNRNTRRRNSYHEHYPPPPPPAYYYHYSSQPLMPQPPQGYFPPPPLPHQYYSNGYTPPLHNHHPPFHATTNTQPSDVDLNLNVVQPLPLPPPPSYVDHETTKKVRNDVNLHKNTLQLHLDPNNPHHHLISFDFDALFDGRITIFYLAKEEEHKCRFVPLFPEAFEPITFPFEKGVGQKFCQPSGTGIDLGFFELDDLSNPSPEEDVFPLVICAETTPLEDHETPASSLLDASPHMQITQAVLEKIDGNAPFQVKVIRQILWIDQVRYELRELYGIGNSTAPDFDRNDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALLLQSDKCPICRQAIEELIEIKINNGDDQ* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3536 400 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 343 383 IPR045195 -
Tpr4g3536 400 PANTHER MAHOGUNIN 45 398 IPR045194 GO:0061630
Tpr4g3536 400 Pfam Zinc finger, C3HC4 type (RING finger) 342 388 - -
Tpr4g3536 400 ProSiteProfiles Zinc finger RING-type profile. 344 383 IPR001841 -
Tpr4g3536 400 SUPERFAMILY RING/U-box 343 389 - -
Tpr4g3536 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 329 393 IPR013083 -
Tpr4g3536 400 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 45 398 - -
Tpr4g3536 400 SMART ring_2 344 382 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3536 Tpr-Chr4 41230059 41232696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3536 147 400 C3H Transcription Factor Family AT3G06140 60.392 1.73e-100 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3536 - - gmx:102665712 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3536 4 41230059 41232696 Tpr4g3536 4 41230059 41232696 ECH