Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3530 ATGATGAATGTATTTTCGATGGTTCCGGGTGTTGTTTCTTGCAAGCCTCCATTGAGTTTCCAACCGGCACTAATGGATAATAACAACAATTCATTGTTCCAACAAAAACATCATCGTAATAACAACAATAAAAACAAAGTTGTTGTTGTCATGGGTGCTACCGGAACCGGGAAATCCAAGTTAGCAATAGATATAGCAACACATTTTTCACCGGCTGAGATTATCAACTCCGATAAAATTCAAGTTTACAAAGGACTTGATATAACAACAAACAAAGTTACCGATGAAGAGTGTTGTGGGGTCCACCATCATTTACTTGGAACCGTTGATCCTAATTTGAATTTCACATCCAACGATTTTTGTGAACACGCTACGGAAACAGTTGCTTCTATTGTTGCAAGAAACGGGTTACCTATTATAGCCGGTGGATCCAATTCGTACATTGAAGCTTTGGTTAATCATTATCCTGAGTTTCGTACAAGGTACGAATGTTGTTTTCTTTGGGTTGATGTTGCATTTCCCGTGCTTCATTCGTCGTTATCCGCACGAGTTGATCGTATGATTGAAGCGGGTCAGGTAAATGAAGTTCGTGAATTTTTTGACGAAAAAAATCGTGATTACACAAGAGGAGTACGAAGAGCCATTGGTGTGCCGGAATTTGACGAATTTTTTAGAGCTGAGTTAGATGGGAGAGTTGATGAAAGAACCATGAAGAAGCTTCTAGAAGTTTCTATTCATGCTCTTAAAATGAATAATATTAAGCTTGCGAATAGACAAGTTTCGAAGATCAATAGGCTTTATGGTATGTGGAAAAGAAACATGCACCGTCTTGATGCAACGGATGTTGTTCTTAAGGAAAGGAATTGGGAGGATTGTGTTTTGGCTAAAAGTCTTAGGATTGTTAATAAGTTTCTATACGAGGATTGTTACAATACTCGCGTTGGTGGTGGTTGTGGTGTTGGGTCATCAATGGCTTCTTCAAGTGTGAATCATCGATTCATATAA 1005 0.3851 MMNVFSMVPGVVSCKPPLSFQPALMDNNNNSLFQQKHHRNNNNKNKVVVVMGATGTGKSKLAIDIATHFSPAEIINSDKIQVYKGLDITTNKVTDEECCGVHHHLLGTVDPNLNFTSNDFCEHATETVASIVARNGLPIIAGGSNSYIEALVNHYPEFRTRYECCFLWVDVAFPVLHSSLSARVDRMIEAGQVNEVREFFDEKNRDYTRGVRRAIGVPEFDEFFRAELDGRVDERTMKKLLEVSIHALKMNNIKLANRQVSKINRLYGMWKRNMHRLDATDVVLKERNWEDCVLAKSLRIVNKFLYEDCYNTRVGGGCGVGSSMASSSVNHRFI* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3530 334 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 33 309 - -
Tpr4g3530 334 Pfam IPP transferase 81 158 - -
Tpr4g3530 334 Pfam IPP transferase 159 261 - -
Tpr4g3530 334 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 173 274 - -
Tpr4g3530 334 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 33 309 IPR039657 -
Tpr4g3530 334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 207 IPR027417 -
Tpr4g3530 334 Gene3D - 44 305 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3530 Tpr-Chr4 41188789 41191059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3530 160 313 C2H2 Transcription Factor Family AT2G27760 28.729 2.71e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3530 K10760 - gmx:100812928 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3530 4 41188789 41191059 Tpr4g3530 4 41188789 41191059 ECH
Tpr4g3530 4 41188789 41191059 Tpr7g2688 7 34101504 34103990 PCT