Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3529 ATGACACTTAGAAACGGTATCATATGCAAACCCCAAATTGTATTGTTTCCATGCTCTTCAAATTTCAAGCAATCAATCTCGGAAATCACATTTTCAACCCCGTCCACTCTTTCACTATCAATTTCTTCCTCCACCGCTCTTCGCAATGCGCATTTTCCATTGTTCTGCTCCATCTCCAGCTCTTCCGTCGAAACTAATAATATGTCTTCTTCAACCAAAATCTTCATTAAAGCCAATGCAGGGCTTCCTCTTGCCACCTCTGAAGCGCAGTTAACGGAAGCGTTTTCAGTGTTTGGTGAAGTTACTCAAGTCAAGCTTTTGATAGATAAGGAATCCGGGCAGTCTCTAGGATTTGCATATATTTGGTTTGTCAAGGAAGAGGCTGCACAATTGGCTGCAAAAGAGATGAATGGAAAGGTAATAATATGCAAACGCTACTAG 441 0.4127 MTLRNGIICKPQIVLFPCSSNFKQSISEITFSTPSTLSLSISSSTALRNAHFPLFCSISSSSVETNNMSSSTKIFIKANAGLPLATSEAQLTEAFSVFGEVTQVKLLIDKESGQSLGFAYIWFVKEEAAQLAAKEMNGKVIICKRY* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3529 146 Gene3D - 56 145 IPR012677 -
Tpr4g3529 146 SMART rrm1_1 73 144 IPR000504 GO:0003723
Tpr4g3529 146 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 20 140 - -
Tpr4g3529 146 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 146 IPR000504 GO:0003723
Tpr4g3529 146 SUPERFAMILY RNA-binding domain, RBD 64 141 IPR035979 GO:0003676
Tpr4g3529 146 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 141 IPR000504 GO:0003723
Tpr4g3529 146 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 20 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3529 Tpr-Chr4 41140523 41143837 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3529 86 138 Eukaryotic Initiation Factors Gene Family AT3G11400 45.283 2.00e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3529 - - mtr:MTR_4g117350 136.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3529 4 41140523 41143837 Tpr4g3529 4 41140523 41143837 ECH