Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3486 ATGGCTTCCTCTCCTCCAAACACCACCGCTCCTCCTCCTCCTCTCCCAGATCCACCAACCGCCGTCCCCCTAGCTCTCCCAGCTCCACTCCCTATCCCTCCCCCCACCTCCACCCGCCGTCTTCCTCCTCCATGCTGGTCCCCTGACGAAACCCTAGCTCTCATCGACTCTTACCGTGACAAATGGTACTCTCTTGGACGTGGAAACCTAAAAGCCACTCACTGGCAAGAAGTTGCTGACGCTGTTTCTCAGCGTTGCCCTAACGCTTCTCCGTCCAAAACTCCTGTTCAATGTCGTCACAAGATGGAGAAGCTTCGTAAGCGTTATCGGACTGAGATTCAACGTGCTCGCTCGCTTCCTCTTTCCAGATTTAACTCCGCTTGGGTTCACTTTAAGCTTATGGATTCTATGGAGAAAGGTCCTTCTCCTGTTAAATCTGAAAACAACGATACCGATAGCGATGATGACGATGAAGAAGAAGATCGAGAACAAGATCTGTATATGGATATCAAAAACGGTCATGGATCTAATACTAGAAGCATCAATAGGTTGTACAAAAACGGTTTCGGTGGTGTTAGTGGTGGTGGTTTTGGTGGAGGGTTTAGGATTAGGTATCCACCGGCACAACCTGAATCGAAGTTTTTCCCCGATCAGAATCAGAAATATAACCCTAATCTGAACCAAAACTATGGGACTCCACCGACAGCATCAACGACAAAGGGGATGGGGAACAAGAGGGAGAGAGATCCCTTGGGAGAGGTTGTGACTGCAATTAAGGTATTGGGTGATGGATTTGTCAGGATGGAACAAATGAAGATGGAGATGGCGAGGGAGATTGAAGCTATGAGGATGGAGATGGAAATGAAGCGAACTGAGATGATTCTCGAATCCCAGCAGCGAATTGTGGAGGCCTTTGCAAAAGCCGTTTCGGATGATAGCAGCAACAATAACAACAACAACAAGATGAAGCCTATTAATAAGAGAATTCCCTCACCACAACAACCATAA 1008 0.4782 MASSPPNTTAPPPPLPDPPTAVPLALPAPLPIPPPTSTRRLPPPCWSPDETLALIDSYRDKWYSLGRGNLKATHWQEVADAVSQRCPNASPSKTPVQCRHKMEKLRKRYRTEIQRARSLPLSRFNSAWVHFKLMDSMEKGPSPVKSENNDTDSDDDDEEEDREQDLYMDIKNGHGSNTRSINRLYKNGFGGVSGGGFGGGFRIRYPPAQPESKFFPDQNQKYNPNLNQNYGTPPTASTTKGMGNKRERDPLGEVVTAIKVLGDGFVRMEQMKMEMAREIEAMRMEMEMKRTEMILESQQRIVEAFAKAVSDDSSNNNNNNKMKPINKRIPSPQQP* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3486 335 Gene3D - 46 111 - -
Tpr4g3486 335 SMART 118neu2 53 142 IPR006578 -
Tpr4g3486 335 MobiDBLite consensus disorder prediction 309 335 - -
Tpr4g3486 335 MobiDBLite consensus disorder prediction 1 42 - -
Tpr4g3486 335 MobiDBLite consensus disorder prediction 223 247 - -
Tpr4g3486 335 ProSiteProfiles Myb-like domain profile. 46 106 IPR001005 -
Tpr4g3486 335 PANTHER TRANSCRIPTION FACTOR 7 322 - -
Tpr4g3486 335 Coils Coil 99 119 - -
Tpr4g3486 335 MobiDBLite consensus disorder prediction 1 45 - -
Tpr4g3486 335 MobiDBLite consensus disorder prediction 137 162 - -
Tpr4g3486 335 Coils Coil 272 292 - -
Tpr4g3486 335 MobiDBLite consensus disorder prediction 307 335 - -
Tpr4g3486 335 MobiDBLite consensus disorder prediction 223 241 - -
Tpr4g3486 335 Pfam Myb/SANT-like DNA-binding domain 44 137 IPR044822 -
Tpr4g3486 335 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 7 322 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3486 Tpr-Chr4 40824510 40826107 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3486 45 137 Trihelix Transcription Factor Family AT3G14180 36.559 3.57e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tpr4g3486 Myb_DNA-bind_4 4.6e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3486 - - vun:114179736 374.4