Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3480 ATGGGTTGTGTTCATGGCAAGGGTTGCTGTGTCAAAAATTCTTCATCTGATGGAGACTCTAGAAAACATGGCTTCCATCATAGCCATAGGAAGAATATACTTGCTCAGAGAGTATTGAAAAATGTTTCTGTTCCTTCCCACAACTTTGTTTTGGAATATACCTTTCTCACACTGCGAGGATACTACCCGGACTCGCTGGATAAACAAAACCAAGATAATTTTTGTATTAGGACACAAATCCAAGGTAACCCTGATATCCATTTCTTTGGTGTTTTTGATGGGCATGGTCAGTTTGGTAGTCAGTGTTCAAACTTTGTTAGGGATAGGTTGGTTGAAAAATTATCTAATGACCCTGCATTGGTGGAGGATCCTGTTCGAGCTTACAATTCTGCGTTTGCGGAAACCAATCATGAGTTGCATACTAGTGACATTGATGATGCTATGAGTGGCACAACAGCAATTACAGTGCTTGTCGTTGGAGACACCCTTTATGTTGCTAATGTTGGTGATTCGAGAGCTGTGATAGCTGCTAAGAATGGGGATCGGATTACTGCAGAGGACTTGTCGTCTGATCAGACACCATTTCGGAGAGATGAATATGAAAGAGTGAAACTTTGTGGAGCAAGGGTGTTGAGTGTTGATCAAGTGGAAGGGATCAAGGATCCAAATATCCAGCATTGGGGTAACGAAGAAAGTTGGGATGGCGATCCTCCTAGATTGTGGCTTCCACATGGGATGTATCCTGGAACTGCATTTACAAGGAGTTTAGGGGATAGGTTGGCGGAGACAATTGGTGTGGTTGCTACTCCCGAGGTGTCAATAGTTCGGCTTACGCCTAATCATCTCTTCTTTGTTGTTGCTAGTGATGGCATATTTGAATTCTTGTCAAGCCAAACTGTTGTTGATATGACTGCGAGATATACAGATCCCCGTGATGCATGTGCCGCTATTACTGAAGAGTCGTATAAACTATGGTTGGAACTTGTGAATCGAACAGATGATATAACAATCATCATTGTCCAGATTAAAGGACTTTCTAATTCAAGTACATCTGGAGTTGAATTAAGTGAGGTCAATGCTGGGACTGCAACGAGAACTCGGAAAGGAACTTCTGATACATCTGCTACCACTGAATTTAATGTTTACTCTCAGTCATCTCAAAGATCAATTGAATCGTGA 1179 0.419 MGCVHGKGCCVKNSSSDGDSRKHGFHHSHRKNILAQRVLKNVSVPSHNFVLEYTFLTLRGYYPDSLDKQNQDNFCIRTQIQGNPDIHFFGVFDGHGQFGSQCSNFVRDRLVEKLSNDPALVEDPVRAYNSAFAETNHELHTSDIDDAMSGTTAITVLVVGDTLYVANVGDSRAVIAAKNGDRITAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGIKDPNIQHWGNEESWDGDPPRLWLPHGMYPGTAFTRSLGDRLAETIGVVATPEVSIVRLTPNHLFFVVASDGIFEFLSSQTVVDMTARYTDPRDACAAITEESYKLWLELVNRTDDITIIIVQIKGLSNSSTSGVELSEVNAGTATRTRKGTSDTSATTEFNVYSQSSQRSIES* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3480 392 MobiDBLite consensus disorder prediction 356 392 - -
Tpr4g3480 392 CDD PP2Cc 68 342 IPR001932 -
Tpr4g3480 392 Pfam Protein phosphatase 2C 72 320 IPR001932 -
Tpr4g3480 392 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 30 380 - -
Tpr4g3480 392 SMART PP2C_4 48 340 IPR001932 -
Tpr4g3480 392 ProSiteProfiles PPM-type phosphatase domain profile. 52 342 IPR001932 -
Tpr4g3480 392 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 30 380 - -
Tpr4g3480 392 ProSitePatterns PPM-type phosphatase domain signature. 88 96 IPR000222 GO:0043169
Tpr4g3480 392 SUPERFAMILY PP2C-like 40 344 IPR036457 -
Tpr4g3480 392 Gene3D - 51 344 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3480 Tpr-Chr4 40785385 40788522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3480 1 347 PP2C-type Phosphatase Gene Family AT3G06270 68.300 4.76e-174 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3480 - - gmx:100797866 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3480 4 40785385 40788522 Tpr7g2734 7 34566014 34569978 PCT