Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3469 ATGGGAAGATACCGAAGCCGTAGCAGAAGTTACAGTCCTCGCCGGCGTAGCCGAACTCCACCACCTCGCGGTCGTAAGCGTTACGACGATGATCGCTATCCTGACACCAGGTCTCACAGAGATCGTCGTTCTCCTCTTCCTTCTGGATTGCTCGTTCGTAATCTCCCCCTTGATGCTAGACCTGAAGATCTTAGGGGACCGTTTGAGCGCTATGGTCCTGTGAAGGATGTTTACCTTCCTAGAAATTATTACACTGGTGAGCCTCGTGGTTTTGGATTTGTGAAATACCGACATGGTGAAGATGCAGCTGAGGCAAAGCAACAACTTAACCACACTATCATTGGTGGACGTGAAATAAGAATTGTGTTTGCTGAGGAAAACAGGAAAACACCTCAAGAAATGCGTGTTACTTCTCATGGAAGTGGTCGAAATGGAGGTGGTAGTAGAAGGAGAGCTCGGTCAAGATCCCCACGACGCCGTTATCGATCCTACTCTAGGTCTCGCTCACCTGCCAGGGATGATTCAAGGGATGGCAGGGGTAGAGATGATGATTATTCTCCAAAGCGATCAAGATCTTATTCTAGGTCTGTCTCTCCTGGTGGTGCCAAGGATGACAGAAGCCCTCCTCGTGCCAAGGACGACAGGTCCCCTCGTGCCAAGGATGACAGAAGCCCCTCTCGTGCCAAGGACGACAGGAGGTCCCCTCGGGCCAAGGACGACAGGAGATCCCCTCGTGCCAAGGAGAATGGTCGCAGTCCACATGATAAGAAGGATCAGGCACCTAGCAGATCTCCGAGCCCCAGGGGCAATGATCGCAGTCCTTCAAGGTCTCGTTCGCGGTCTTACAGTCCACGCTGA 858 0.5221 MGRYRSRSRSYSPRRRSRTPPPRGRKRYDDDRYPDTRSHRDRRSPLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRHGEDAAEAKQQLNHTIIGGREIRIVFAEENRKTPQEMRVTSHGSGRNGGGSRRRARSRSPRRRYRSYSRSRSPARDDSRDGRGRDDDYSPKRSRSYSRSVSPGGAKDDRSPPRAKDDRSPRAKDDRSPSRAKDDRRSPRAKDDRRSPRAKENGRSPHDKKDQAPSRSPSPRGNDRSPSRSRSRSYSPR* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3469 285 MobiDBLite consensus disorder prediction 23 46 - -
Tpr4g3469 285 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 284 - -
Tpr4g3469 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 120 IPR000504 GO:0003723
Tpr4g3469 285 SMART rrm1_1 49 122 IPR000504 GO:0003723
Tpr4g3469 285 MobiDBLite consensus disorder prediction 263 285 - -
Tpr4g3469 285 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28 1 284 - -
Tpr4g3469 285 Gene3D - 23 164 IPR012677 -
Tpr4g3469 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 126 IPR000504 GO:0003723
Tpr4g3469 285 SUPERFAMILY RNA-binding domain, RBD 50 153 IPR035979 GO:0003676
Tpr4g3469 285 MobiDBLite consensus disorder prediction 1 50 - -
Tpr4g3469 285 MobiDBLite consensus disorder prediction 205 262 - -
Tpr4g3469 285 MobiDBLite consensus disorder prediction 126 285 - -
Tpr4g3469 285 MobiDBLite consensus disorder prediction 146 165 - -
Tpr4g3469 285 MobiDBLite consensus disorder prediction 1 22 - -
Tpr4g3469 285 MobiDBLite consensus disorder prediction 166 190 - -
Tpr4g3469 285 SMART rrm2_1 49 122 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3469 Tpr-Chr4 40693270 40697283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3469 52 110 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 6.05e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3469 K12900 - gmx:100788749 268.47