Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3458 ATGGGGTGTGTGTTTGGGAAAGAGGGTTCAGAGAGGAAAAAAGAGGTGGTGAAAGTTGCTAAGGTGGAGGAGGTTGAACTTGAGTGTGAGGTTCAAAATGGTGTGAATGAGAAAGAGGGTGGAGCTGGAGATGATGAGAAGAGGAGGAGACAAAGAGCAAGGAGGGAGAGGAGGAGGCAATCTTTGAAGCCTAATCCAAGGCTGAGCAATCCACCTAATCATATCCATGGTGAGCAAGTTGCTGCAGGGTGGCCCTCTTGGCTTTCCAAGGTTGCTGGAGAAGCTATACATGGATTGACGCCTCGAAGGGCGGACAGTTTTCATAAGCTTGATAAGATTGGACAAGGTACATATAGCAATGTTTATAAAGCTAAGGATACTTTAACTGGAAAAATTGTTGCATTAAAGAAGGTTCGTTTTGACAATTTAGAGCCAGAGAGTGTGAAATTCATGGCCAGAGAAATTCTGATTCTGCGACGTTTGGATCATCCCAATGTTGTCAAACTAGAGGGTTTAGTGACTTCTAGGATGTCATGTAGTTTGTATCTTGTCTTTCAATACATGGAGCATGATTTGGCTGGACTTTCTACAAGCCCCACAATTAAGTTTACAGTGTCTCAGGTTAAATGTTACATGCATCAGCTATTTTCTGGACTGGAACACTGTCATAACCGTAATGTGCTGCATCGTGATATAAAGGGATCAAACCTTCTTGTTGACAATGAAGGAATTCTTAGGATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTAATCACAAACATCCTATGACTAGTAGGGTGGTTACTTTATGGTATCGATCTCCCGAACTTCTTCTTGGAGCCACTGAATATGATGTAGGAGTGGACCTGTGGAGTGCTGGCTGTATTCTTGCTGAATTGTTGGCTGGAAGGCCTATTATGCCCGGTCGAACAGAGGTTGAACAGCTACATAAGATATTTAAGCTATGTGGTTCTCCTTCTGAAGAATATTGGAAAAAGGCAAAGCTACCACATGCTACAATTTTTAAGCCGCAACAATCATATAAGCGATGCATATCAAATAAATTTGAAGATTTCCCACCATCATCATTGCCACTAATTGAAACCCTTCTAGCTATCGATCCAGATGAACGACAAACAGCCACTGCTGCATTGCACAGTGAATTCTTTATGACACAGCCTTATGCTTGTGAACCCTCTAACCTTCCAAAATATCCTCCCAGTAAGGAGATGGATACAAAACTACGGGATGAAGAAGCTAGAAGATTAAGAGCCGCGGGCAAAGGTAATGCTGTTGGAACTAAGAAATCACGTTCACGTGATCGAGGCGGGAGGGGAATTCCAGTTCCAGAGGTCAATGCTGAGCTGCAAGCAAATATTGATAAATGGAGACTGGTAACGCGTGCAAATGCGAAGAGCAAGAGTGAGAAATTTCCTCCTCCTCACCAAGATGGAACTTTAGGCTATCCTTTGAGTTCATATCACATGGATCCAGTTTTCGATCCTCCTGATGTTCCATTTAGTTCCATAGATTTCTCATATACTAAAGCAAGTATTCAAACCTGGTCCGGCCCATTGATGGAACCGAGGATGAGTGCACCGAGGAGAAAGAAGAACAAGGCAGGCCTCAAGAAGGACATAAACAGGTAG 1653 0.4301 MGCVFGKEGSERKKEVVKVAKVEEVELECEVQNGVNEKEGGAGDDEKRRRQRARRERRRQSLKPNPRLSNPPNHIHGEQVAAGWPSWLSKVAGEAIHGLTPRRADSFHKLDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFQYMEHDLAGLSTSPTIKFTVSQVKCYMHQLFSGLEHCHNRNVLHRDIKGSNLLVDNEGILRIADFGLASFFDPNHKHPMTSRVVTLWYRSPELLLGATEYDVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEEYWKKAKLPHATIFKPQQSYKRCISNKFEDFPPSSLPLIETLLAIDPDERQTATAALHSEFFMTQPYACEPSNLPKYPPSKEMDTKLRDEEARRLRAAGKGNAVGTKKSRSRDRGGRGIPVPEVNAELQANIDKWRLVTRANAKSKSEKFPPPHQDGTLGYPLSSYHMDPVFDPPDVPFSSIDFSYTKASIQTWSGPLMEPRMSAPRRKKNKAGLKKDINR* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3458 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Tpr4g3458 550 CDD STKc_CDK9_like 107 391 - -
Tpr4g3458 550 MobiDBLite consensus disorder prediction 30 51 - -
Tpr4g3458 550 MobiDBLite consensus disorder prediction 525 550 - -
Tpr4g3458 550 SUPERFAMILY Protein kinase-like (PK-like) 101 396 IPR011009 -
Tpr4g3458 550 Gene3D Phosphorylase Kinase; domain 1 95 189 - -
Tpr4g3458 550 MobiDBLite consensus disorder prediction 427 449 - -
Tpr4g3458 550 SMART serkin_6 107 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3458 550 Pfam Protein kinase domain 107 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3458 550 Gene3D Transferase(Phosphotransferase) domain 1 190 429 - -
Tpr4g3458 550 ProSiteProfiles Protein kinase domain profile. 107 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3458 550 MobiDBLite consensus disorder prediction 30 75 - -
Tpr4g3458 550 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Tpr4g3458 550 PANTHER CELL DIVISION PROTEIN KINASE 47 541 - -
Tpr4g3458 550 PANTHER OS01G0367700 PROTEIN 47 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3458 Tpr-Chr4 40613743 40617094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3458 102 429 Core Cell Cycle Gene Families AT5G10270 49.419 4.15e-111 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tpr4g3458 Pkinase 2.1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3458 K08819 - gmx:100814207 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3458 4 40613743 40617094 Tpr4g3458 4 40613743 40617094 ECH
Tpr4g3458 4 40613743 40617094 Tpr7g2762 7 34843170 34847561 PCT