Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3452 ATGAACACCCATATGGAAGTTTACACTAACAAGAATAATACTGAAATGAGTAACAGAAAACGTGGTGCTACTGCAACAAAAAGCGAAGAAACTCTTAACACAGAACGTGAAAGAAGGAAGAAATTGAATCAAATGTTCACTCACCTTAACACCACTGTCCCTACTCTTCTTCCCAATGCTACAAAGGAAGCGATTATAACTGAAACAATTGAATACATTAAGGAACTTGAAAAGAAGAAGAAAATGTTGGAGGATCTGAAGGAATTGATCAAGATACCGGTGATTCAAGGGAGTTTGTTGATTCCGTGTCGTAATAGGAATTGCTCTGTATCTGTTACTGTTTCTAACAATGTAGCTTTTTTTGGAATTGAATCTGTGGCTAAACCTGGTTTGATTACTCTGATTTTGAAGGTGTTTTTCAACAATCAATCTGAGATTTTAGCTGCTAATGTTTCTGTTAATGATGGGATTTTGATCTTGGCGATCACAGCTTTGGTTCAAAGTGGTAATAGTGCTACTATTGAGAAGATTAAGAGAGAAATTATGAGTTTGTAG 555 0.3568 MNTHMEVYTNKNNTEMSNRKRGATATKSEETLNTERERRKKLNQMFTHLNTTVPTLLPNATKEAIITETIEYIKELEKKKKMLEDLKELIKIPVIQGSLLIPCRNRNCSVSVTVSNNVAFFGIESVAKPGLITLILKVFFNNQSEILAANVSVNDGILILAITALVQSGNSATIEKIKREIMSL* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3452 184 Coils Coil 66 89 - -
Tpr4g3452 184 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 26 76 IPR011598 GO:0046983
Tpr4g3452 184 Coils Coil 25 45 - -
Tpr4g3452 184 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 183 - -
Tpr4g3452 184 MobiDBLite consensus disorder prediction 1 36 - -
Tpr4g3452 184 MobiDBLite consensus disorder prediction 1 21 - -
Tpr4g3452 184 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 10 183 - -
Tpr4g3452 184 Gene3D - 26 94 IPR036638 GO:0046983
Tpr4g3452 184 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 33 98 IPR036638 GO:0046983
Tpr4g3452 184 MobiDBLite consensus disorder prediction 22 36 - -
Tpr4g3452 184 Pfam Helix-loop-helix DNA-binding domain 34 77 IPR011598 GO:0046983
Tpr4g3452 184 SMART finulus 32 82 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3452 15 85 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46510 44.000 6.80e-09 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr4g3452 HLH 3.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3452 - - cam:101491921 177.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3452 4 40530821 40531865 Tpr4g3452 4 40530821 40531865 ECH