Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr4g3449 | ATGGCAATAACTTCCAAATCTCAGGTTTCAAGCGCCTCCAATTCTTCATCATCATCTGAAGAAGAAGAAGAGGTTGAGAACGTTAACGACCAGATCGAAGATGACGAAGACGAACTCGAAGCCGTTGCTCGTTCCCCTGACTCCGATGACGACGATGATAATGTTCCAGATGAAGCCGCCGAAGTCGACGAAGATGCCGATGACGGCGAAGACGATAATCAGGATGAAAGTAATGTTAATCCTGAGATTAGTAAGCGTGAGAAAGCGAGATTAAAAGAATTGGAGAGGTTGAAGAAACAGAAGATTCAGGAAATATTGGATGCACAAAATGCAACTATTGATGCTTCTATGAACACTAAAGGAAAAGGGCGACTGAAGTATCTATTGCAGCAAACTGAGCTGTTTGCTCATTTTGCAAAAAGTGAGCAATCTTCATCTCAGAAAAAGACTAAGGGAAGAGGACGCCATGCTTCAAAAGTGACTGAGGAAGAGGAGGATGAAGAATACCTCAAAGAAGAAGAAGGTGGTTTAGGAAATACACGGCTGGTTACTCAACCATCTTGTATCCAAGGAAAAATGAGGGATTACCAACTTGCGGGACTTAATTGGCTCATACGTTTGTATGAAAATGGAATAAATGGAATTTTAGCAGATGAAATGGGTCTTGGCAAAACTTTACAAACTATATCTTTATTGGGCTATTTACATGAGTTCAGAGGAATAACGGGTCCGCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGACGCTTCTGTCCTGTTTTAAGGGCAATTAAGTTCCTTGGTAGCCCTGATGAAAGGAAACATATAAGAGAGGACTTATTGGTTGCTGGAAAGTTTGATGTGGTTGTGACAAGTTTTGAAATGGTAATCAAGGAGAAGACAACATTGCGTCGATTTAGTTGGCGTTATGTTATTATTGATGAAGCCCATCGGATCAAGAATGAGAACTCCCTCCTGTCCAAAACAATGAGGCTATATAATACAAACTACCGGCTCCTTATAACTGGCACACCGCTACAGAACAATCTTCATGAGCTCTGGTCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACGTTTGATGAATGGTTTCAAATCTCCGGTGAAAATGACCAACAGGAGGTTGTTCAACAACTTCACAAGGTCCTCCGTCCATTTCTTCTTCGAAGATTGAAATCAGATGTGGAGAAAGGGTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGCATGTCCCAAATGCAGAAACAATATTATAAGGCATTACTGCAGAAGGATCTTGAGGTTGTGAATGCTGGTGGAGAACGGAAGCGTCTCCTAAATATAGCAATGCAACTTCGTAAATGTTGCAATCATCCATATCTTTTCCAAGGGGCTGAACCTGGTCCTCCCTACACAACAGGGGATCATCTCATTACAAATGCTGGCAAAATGGTTCTAATGGATAAATTACTTCCCAAACTAAAAGAGCGGGATTCTAGGGTCCTAATATTTTCACAGATGACTAGACTGCTAGACATACTTGAAGATTATTTGATGTTTCGTGGATACCAATATTGTCGCATAGATGGTAATACTGGTGGAGATGACCGTGATGCGTCCATTGAGGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCTACTCGAGCTGGAGGTCTCGGCATCAATCTTGCTACTGCCGATGTTGTTATTCTTTATGATAGTGACTGGAACCCACAAGCTGACTTGCAAGCTCAAGATCGAGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCAGATTCTGCACTGAGTATACGATCGAGGAAAAGGTCATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGGCGATTAGCTGAGCAGAAGTCTGTTAATAAAGATGATTTGCTTCAAATGGTTAGATTCGGTGCCGAAATGGTTTTTAGTTCCAAGGACAGTACAATTACAGATGAAGATATTGACAGAATTATTGCCAAAGGAGAGGAATCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACTGAAGATGCAATCAAATTTAAGATGGATGACACTGCTGATTTGCTTGACTTTGATGATGAGAAAGATGAGAACAAAGTTGATTTCAAAAAAATTGTGAGTGACAACTGGGTTGAGCCATCACGAAGAGAACGGAAGCGAAATTACTCAGAGTCTGAATACTTCAAGCAAACAATGCGCCAAGCTGCTCCTACTAAACCAAAAGAACCCCGAATTCCTAGGATGCCTCAATTGCATGATTTTCAGTTCTTCAACAACCACAGGCTGAGTGAGCTGTATGAAAAGGAAGTTCGATATCTAATGCAAGCACATCAGAAGAATCAAGTAAAAGATTCCATAGATGTTGATGAACCAGAAGAGGTGGGAGAGCCATTGACTGCAGAAGAGTCTGAAGAAAAGGAGCAACTTCTAGAGGAGGGATTTTCATCATGGAGCCGGAAGGATTTTAATACTTTCATTAGGGCATGTGAAAAATATGGCCGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGAAAGACAGAAGAAGAAGTAGAAAGATATGCAGAAGTTTTCAGAGAGCGATACAAGGAGTTGAATGATTATGACAGAATTATAAAAAACATTGAAAGAGGTGAGTCAAGAATAGCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCTTGGCTAGAGTTGAAGATACAATATGGACAAAACAAAGGGAAATTATACAATGAAGAATGTGATCGATTCATGATATGCATGACTCACAAACTTGGATATGGGAATTGGGATGAATTGAAGGCGGCATTTCGAATGTCACCCTTGTTTCGTTTTGATTGGTTTGTAAAGTCACGCACAACTCAGGAACTAACAAGGAGATGTGACACCCTCATTCGGCTGGTAGAGAAGGAAAATCAAGAATATGATGAAAGGGAGAGACAAGCTCGTAAAGAAAAGAAACTTGCCACTAAGAGTTCGACTCCATCAAAGCGCCCCTTGCCAAGACAAGCAGAGAGTCCATCTCTGAAGAAGCGGAAGCAATTAACGATGGATCACTATGTAAGCTCGGGGAAGAGAAAAAAATAA | 3207 | 0.4066 | MAITSKSQVSSASNSSSSSEEEEEVENVNDQIEDDEDELEAVARSPDSDDDDDNVPDEAAEVDEDADDGEDDNQDESNVNPEISKREKARLKELERLKKQKIQEILDAQNATIDASMNTKGKGRLKYLLQQTELFAHFAKSEQSSSQKKTKGRGRHASKVTEEEEDEEYLKEEEGGLGNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGSPDERKHIREDLLVAGKFDVVVTSFEMVIKEKTTLRRFSWRYVIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLMDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKSVNKDDLLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEESTAELDAKMKKFTEDAIKFKMDDTADLLDFDDEKDENKVDFKKIVSDNWVEPSRRERKRNYSESEYFKQTMRQAAPTKPKEPRIPRMPQLHDFQFFNNHRLSELYEKEVRYLMQAHQKNQVKDSIDVDEPEEVGEPLTAEESEEKEQLLEEGFSSWSRKDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAEVFRERYKELNDYDRIIKNIERGESRIARKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMTHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLATKSSTPSKRPLPRQAESPSLKKRKQLTMDHYVSSGKRKK* | 1069 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr4g3449 | 1068 | MobiDBLite | consensus disorder prediction | 1015 | 1032 | - | - | |
| Tpr4g3449 | 1068 | Coils | Coil | 84 | 111 | - | - | |
| Tpr4g3449 | 1068 | MobiDBLite | consensus disorder prediction | 1044 | 1062 | - | - | |
| Tpr4g3449 | 1068 | PANTHER | SNF2/RAD54 HELICASE FAMILY | 10 | 1068 | - | - | |
| Tpr4g3449 | 1068 | MobiDBLite | consensus disorder prediction | 19 | 77 | - | - | |
| Tpr4g3449 | 1068 | CDD | SANT | 847 | 887 | IPR001005 | - | |
| Tpr4g3449 | 1068 | ProSiteProfiles | SANT domain profile. | 843 | 895 | IPR017884 | - | |
| Tpr4g3449 | 1068 | SMART | sant | 844 | 893 | IPR001005 | - | |
| Tpr4g3449 | 1068 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Tpr4g3449 | 1068 | Gene3D | - | 932 | 1036 | - | - | |
| Tpr4g3449 | 1068 | Gene3D | - | 844 | 898 | - | - | |
| Tpr4g3449 | 1068 | PANTHER | REMODELING FACTOR, PUTATIVE-RELATED | 10 | 1068 | - | - | |
| Tpr4g3449 | 1068 | SMART | helicmild6 | 524 | 608 | IPR001650 | - | |
| Tpr4g3449 | 1068 | SUPERFAMILY | HAND domain of the nucleosome remodeling ATPase ISWI | 756 | 846 | IPR036306 | GO:0003677|GO:0006338|GO:0031491 | |
| Tpr4g3449 | 1068 | MobiDBLite | consensus disorder prediction | 1015 | 1068 | - | - | |
| Tpr4g3449 | 1068 | Coils | Coil | 18 | 45 | - | - | |
| Tpr4g3449 | 1068 | SMART | ultradead3 | 189 | 381 | IPR014001 | - | |
| Tpr4g3449 | 1068 | Pfam | SNF2-related domain | 206 | 473 | IPR000330 | GO:0005524|GO:0140658 | |
| Tpr4g3449 | 1068 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 205 | 370 | IPR014001 | - | |
| Tpr4g3449 | 1068 | Pfam | Helicase conserved C-terminal domain | 498 | 608 | IPR001650 | - | |
| Tpr4g3449 | 1068 | Pfam | HAND | 757 | 840 | IPR015194 | GO:0003677|GO:0006338|GO:0031491 | |
| Tpr4g3449 | 1068 | Gene3D | ISWI, HAND domain | 745 | 843 | IPR036306 | GO:0003677|GO:0006338|GO:0031491 | |
| Tpr4g3449 | 1068 | CDD | DEXHc_SMARCA1_SMARCA5 | 190 | 410 | IPR044754 | GO:0005524 | |
| Tpr4g3449 | 1068 | SUPERFAMILY | Homeodomain-like | 899 | 1021 | IPR009057 | - | |
| Tpr4g3449 | 1068 | Pfam | SLIDE | 901 | 1011 | IPR015195 | GO:0003677|GO:0005634|GO:0006338 | |
| Tpr4g3449 | 1068 | SUPERFAMILY | Homeodomain-like | 847 | 897 | IPR009057 | - | |
| Tpr4g3449 | 1068 | CDD | SF2_C_SNF | 494 | 619 | - | - | |
| Tpr4g3449 | 1068 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 181 | 408 | IPR027417 | - | |
| Tpr4g3449 | 1068 | MobiDBLite | consensus disorder prediction | 1 | 88 | - | - | |
| Tpr4g3449 | 1068 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 410 | 690 | IPR027417 | - | |
| Tpr4g3449 | 1068 | MobiDBLite | consensus disorder prediction | 813 | 836 | - | - | |
| Tpr4g3449 | 1068 | Gene3D | - | 194 | 409 | IPR038718 | - | |
| Tpr4g3449 | 1068 | Gene3D | - | 414 | 706 | IPR027417 | - | |
| Tpr4g3449 | 1068 | Coils | Coil | 994 | 1028 | - | - | |
| Tpr4g3449 | 1068 | MobiDBLite | consensus disorder prediction | 139 | 173 | - | - | |
| Tpr4g3449 | 1068 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 498 | 649 | IPR001650 | - | |
| Tpr4g3449 | 1068 | Gene3D | iswi atpase | 899 | 931 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tpr4g3449 | Tpr-Chr4 | 40505161 | 40514315 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr4g3449 | 214 | 635 | RAD5 or RAD16-like Gene Family | AT1G02670 | 26.931 | 3.15e-42 | 163 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | SNF2 | Tpr4g3449 | SNF2_N | 4.3e-73 | CL0023 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr4g3449 | K11654 | - | gmx:100791510 | 1841.24 |
Event-related genes