Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3448 ATGGGTTGTTTTCCTTGTTTTGTAGCTTTCAACAAAGAAGCTTCCCATGTTCACTCTAGAAGGGTTACCTCAGAAAAATTCAAATTACTGAGTACCTCAAGTCCGAACACGAAAGATGAGTTAGAAGGAAGTGTGCGTACACATACATTTACATTACAAGAGCTTAAAGCCGCTACTAATAATTTTTCGCCAGAATGTTTACTAGGTGAAGGGGGCTTTGGGCCTGTATACAAAGGTCGCCTTGAGAACCCTAAGAACAAAGCAGTTGCTGTAAAACAGCTTAAGCAGAAAAGTTGTCAAGGTGATCGAGAATTTTTGGCGGAGGTTCTCATGCTGAACCTATTAAATCACAAAAATCTTGTGAACTTGATTGGTTATTGTGCCGATGGAGATCAACGGTTACTTGTTTACGAGTATATGGCATTTGGATCTTTAGACAAGCATTTACATGATCTTCCTCCTCGCGCAAAGCCGCTAGATTGGAATACAAGGATGAAAATAGCATTGGCGACAGCAAAGGGATTGAAGTATATGCATAAGGCAAATCCCCCTGTAATATATAGAGACTTAAAATCATCCAACATTCTCCTTGATGAAAATTATCAAGCCAAGTTATCAGATTTTGGGTTGGCAAAACTTGGACCAATTGGTGATAGGAGTCATGTAACCACTAGAGTAATGGGAACATATGGTTATTGTGCCCCTGAATATTTTATGACAGGACAACTAACTATGAAGTCTGATGTTTATAGTTATGGAGTATTCATGCTCGAACTTATCTCAGGACGCAGAGCTATCGATGATAAACGTCCACAAGCCGAGCGAAGTCTAGTTGTTTGGGCAAAAAGTCATTTTAAAAACCGTAGGGACTTTATCAAATTGGTTGACCCTCAACTTCAAGGTCGTTTTCCAATGGAAGGACTATATCAAGCAGTTGCTATTGCAGCAATGTGTGTACATACACAAGCTTCAACAAGGCCTCTCATTGGTGATATTGTGGATAGTCTTACATACATGACAAGAAGGGACACATCACCCAAATTGAGAAAAAAGTATGATGACTAA 1065 0.3944 MGCFPCFVAFNKEASHVHSRRVTSEKFKLLSTSSPNTKDELEGSVRTHTFTLQELKAATNNFSPECLLGEGGFGPVYKGRLENPKNKAVAVKQLKQKSCQGDREFLAEVLMLNLLNHKNLVNLIGYCADGDQRLLVYEYMAFGSLDKHLHDLPPRAKPLDWNTRMKIALATAKGLKYMHKANPPVIYRDLKSSNILLDENYQAKLSDFGLAKLGPIGDRSHVTTRVMGTYGYCAPEYFMTGQLTMKSDVYSYGVFMLELISGRRAIDDKRPQAERSLVVWAKSHFKNRRDFIKLVDPQLQGRFPMEGLYQAVAIAAMCVHTQASTRPLIGDIVDSLTYMTRRDTSPKLRKKYDD* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3448 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Tpr4g3448 354 Gene3D Transferase(Phosphotransferase) domain 1 140 353 - -
Tpr4g3448 354 Pfam Protein tyrosine and serine/threonine kinase 67 335 IPR001245 GO:0004672|GO:0006468
Tpr4g3448 354 Gene3D Phosphorylase Kinase; domain 1 32 139 - -
Tpr4g3448 354 PANTHER OS07G0668900 PROTEIN 31 348 - -
Tpr4g3448 354 CDD STKc_IRAK 68 337 - -
Tpr4g3448 354 SUPERFAMILY Protein kinase-like (PK-like) 46 334 IPR011009 -
Tpr4g3448 354 PANTHER OS07G0668900 PROTEIN 31 348 - -
Tpr4g3448 354 SMART serkin_6 62 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3448 354 ProSiteProfiles Protein kinase domain profile. 62 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3448 Tpr-Chr4 40501952 40504137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3448 1 354 Glycoside Hydrolase AT3G07070 54.301 1.42e-139 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Tpr4g3448 PK_Tyr_Ser-Thr 7.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3448 - - mnt:21406335 454.136