Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3439 ATGTCAACCTCTAAAAAAACAACATCAGATTCATCTTTCAAAGGATATCATGAAACAAACCAAACACAAATGTGTCTATCATCACTTATCCTTCAAAGGAACAATAACACATTACCAAATGGTGAAAAAAGAGGAAGAAGAAAACAAACAGAACCAGGTAGGTTTCTTGGTGTTAGAAGAAGACCTTGGGGTAGATATGCTGCTGAAATTAGAGACCCTACAACTAAAGAAAGACATTGGTTAGGTACTTTTGATACTGCTCAAGAAGCTGCTCTTGCTTATGATAGAGCTGCTATTTCCATGAAAGGAAATCAAGCTAGAACAAATTTCATTTACTCTGATACTATCAATTTTCATACACTTGTTTCTTCTCCTTTAGATCTTCAAGTTCAAGTTCAACATACTCTTTTGCCATCTTCACAAGAAACCAATCAAAATAGTACACTTTTTCAGCTTAACACTCCACACACTACTAGTAGAAATGATCAAAACTCTTTCTCATTGAACAATAGTAGTACTTTTGATCATGAAAAAACAGAAAATGAATCATCAACTCATCATGATGAAAATTTCTTTTTTACTAATGAGACTAAAAACAACTCTGGTTATCTTGAATGCATAGTTCCTGATAACTGTTTGAGAAACACTTCAAATGATCAAAAAGTTAGCAACAATGGTGAAAGCAACAGATTTTTGATGGAGGGTGAATCACATTTTGGTATGGCTTCATTCTCTGAAGAAATGCCAACAAGGGTTTCTAGCTTTTCAGAGTTTTCTTGTTATCCAAGTGAAATTAGTGAAGGTTTCTTGGATTGGAATTCTAATGAACTTTCAGCTATATTTAACAATAATCCGTTAAGAGTTGAAGATGAATGCATGGATACATTGTATCCTAATTATCCCATCATTGAAAATCTAAGTCCAAGCTATGTTATGATGAATGACCAATCTACTTCTTCAACTAACTATTCTCCATCACTTGAATTTGGTTACCCTCTCTTTTGA 1005 0.3343 MSTSKKTTSDSSFKGYHETNQTQMCLSSLILQRNNNTLPNGEKRGRRKQTEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAAISMKGNQARTNFIYSDTINFHTLVSSPLDLQVQVQHTLLPSSQETNQNSTLFQLNTPHTTSRNDQNSFSLNNSSTFDHEKTENESSTHHDENFFFTNETKNNSGYLECIVPDNCLRNTSNDQKVSNNGESNRFLMEGESHFGMASFSEEMPTRVSSFSEFSCYPSEISEGFLDWNSNELSAIFNNNPLRVEDECMDTLYPNYPIIENLSPSYVMMNDQSTSSTNYSPSLEFGYPLF* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3439 334 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Tpr4g3439 334 MobiDBLite consensus disorder prediction 152 174 - -
Tpr4g3439 334 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Tpr4g3439 334 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 328 - -
Tpr4g3439 334 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Tpr4g3439 334 MobiDBLite consensus disorder prediction 152 187 - -
Tpr4g3439 334 Pfam AP2 domain 57 103 IPR001471 GO:0003700|GO:0006355
Tpr4g3439 334 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Tpr4g3439 334 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Tpr4g3439 334 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF086 1 328 - -
Tpr4g3439 334 CDD AP2 54 110 IPR001471 GO:0003700|GO:0006355
Tpr4g3439 334 SUPERFAMILY DNA-binding domain 55 112 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3439 Tpr-Chr4 40425874 40427125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3439 1 214 AP2-EREBP Transcription Factor Family AT5G18560 45.850 1.00e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr4g3439 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3439 - - cam:101500468 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3439 4 40425874 40427125 Tpr7g2783 7 35083368 35084222 PCT