Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3438 ATGGAACGGTACGGCCGAGCAAACGAAGGTTCCAACTCTGATCCCACGCTCGAATGGACTCTCGCCGGTGTAGATACATCTCATCAAGCAGGTTATGGATTGGTTAGTGGTGAATCGTATCCTCAAAGACCAGATGAAGCTGATTGTATCTATTATTTGAGGACAGGTTTTTGCGGTTATGGTTCGAGGTGTCGGTTTAACCATCCACGTGACCGTGGCGCGGTTATTGGAGCTGCGAGGATTGCAGGGGAATATCCAGAAAGAGTTGGACAGCCGGTGTGCCAGTATTATATAAGGACCGGAGCGTGCAAATTTGGTGCATCTTGCAAGTATCACCATCCTAGACAGGCAGCTGGCACTACTGCCCCTGTGTCACTAAATTATTATGGATATCCATTGCGAGCGGGTGAGAAAGAGTGTTCCTATTATGCAAAAACCGGACAGTGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCCCAGCCTGCAGGTGTCCAAATGATACCACCATCACCAGTTCCCCAAGTTTCACCTCTGCCTATGCCGGTACCTTCACCAATGTATCAAACTGTACAGCCTCCATCCGGTCCTTCACAACAACAGTATGGTGTACTTGTTGCGAGGCCACCTTTGCTGCATGGCTCATTTGTCCAGGGTCCCTATGGGCCTATGGTAGTGTCCCCCACCATGGTCCCCTTTTCAGGCTGGAGTCCTTATCAGGCTCCAGCACAAAGTCCTTTACTTCCTTCTAGTACTCCGTTGAGTGTTGGTCCAACACAAATTTATGGCATGACCCAGGTACCTTCACCAACTACTGCCTATACCGGACATTTTCAATCTTCTGGTTCCTCAACTGGTCCTTCAGGCAGTAGTCAGAAGGAAAGCTCATTACCTGAAAGACCTGATCAGCAGGAGTGTCATCATTACATGAAAACAGGGGAGTGTAAATTTGGTTCTTCGTGTAGATATCATCATCCGCAGGACATGGGTGCACCAAAAGTGAACTTTAGTCCCATTGGTCTTCCTTTGCGCCCGGGGGCCCAACCTTGCACTCATTATACGCAGCGTGGAATTTGTAAGTTTGGATCTGCATGCAAATTTGATCATCCTATGGGATCCCTGAGTTACAGTCCATCTGCTTCTTCCCTAGCTGATATGCCAGTTGCACCCTATCCTGTGGGTTCCTCCATTGGTACTCTTGCTCCATCGTCGTCATCATCCGAGTTGAGGCCTGAACTTGCCTCAGGATCCAGCAAGGAGTCCGCTTCATCCAGAATGTCTTCATCAATGAGCACATCGACTGCATCAGTTGGCTTGACTTTGTCAACTGTTGCACCGGTTTCTCAATCAAGTACTCAGCCATCTGCTCAGAGTGCCAGTTCTTTAGCAACTCCCAGTGCCACCACAAGTAGCACTGTCTCTCACACCTCAAGCTAA 1437 0.4871 MERYGRANEGSNSDPTLEWTLAGVDTSHQAGYGLVSGESYPQRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAVIGAARIAGEYPERVGQPVCQYYIRTGACKFGASCKYHHPRQAAGTTAPVSLNYYGYPLRAGEKECSYYAKTGQCKFGATCKFHHPQPAGVQMIPPSPVPQVSPLPMPVPSPMYQTVQPPSGPSQQQYGVLVARPPLLHGSFVQGPYGPMVVSPTMVPFSGWSPYQAPAQSPLLPSSTPLSVGPTQIYGMTQVPSPTTAYTGHFQSSGSSTGPSGSSQKESSLPERPDQQECHHYMKTGECKFGSSCRYHHPQDMGAPKVNFSPIGLPLRPGAQPCTHYTQRGICKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELASGSSKESASSRMSSSMSTSTASVGLTLSTVAPVSQSSTQPSAQSASSLATPSATTSSTVSHTSS* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3438 478 MobiDBLite consensus disorder prediction 278 297 - -
Tpr4g3438 478 MobiDBLite consensus disorder prediction 401 478 - -
Tpr4g3438 478 MobiDBLite consensus disorder prediction 278 302 - -
Tpr4g3438 478 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 468 - -
Tpr4g3438 478 SUPERFAMILY CCCH zinc finger 91 116 IPR036855 GO:0046872
Tpr4g3438 478 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Tpr4g3438 478 SUPERFAMILY CCCH zinc finger 347 374 IPR036855 GO:0046872
Tpr4g3438 478 PANTHER PROTEIN PHOSPHATASE RELATED 1 468 - -
Tpr4g3438 478 ProSiteProfiles Zinc finger C3H1-type profile. 88 116 IPR000571 GO:0046872
Tpr4g3438 478 SUPERFAMILY CCCH zinc finger 136 162 IPR036855 GO:0046872
Tpr4g3438 478 SUPERFAMILY CCCH zinc finger 302 328 IPR036855 GO:0046872
Tpr4g3438 478 SMART c3hfinal6 43 70 IPR000571 GO:0046872
Tpr4g3438 478 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Tpr4g3438 478 SMART c3hfinal6 300 327 IPR000571 GO:0046872
Tpr4g3438 478 SMART c3hfinal6 344 371 IPR000571 GO:0046872
Tpr4g3438 478 SMART c3hfinal6 88 115 IPR000571 GO:0046872
Tpr4g3438 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 327 IPR000571 GO:0046872
Tpr4g3438 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 161 IPR000571 GO:0046872
Tpr4g3438 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 348 371 IPR000571 GO:0046872
Tpr4g3438 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 115 IPR000571 GO:0046872
Tpr4g3438 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 45 70 IPR000571 GO:0046872
Tpr4g3438 478 ProSiteProfiles Zinc finger C3H1-type profile. 43 71 IPR000571 GO:0046872
Tpr4g3438 478 Gene3D - 41 121 - -
Tpr4g3438 478 Gene3D - 297 383 - -
Tpr4g3438 478 Gene3D - 122 171 - -
Tpr4g3438 478 SUPERFAMILY CCCH zinc finger 45 71 IPR036855 GO:0046872
Tpr4g3438 478 ProSiteProfiles Zinc finger C3H1-type profile. 344 372 IPR000571 GO:0046872
Tpr4g3438 478 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3438 Tpr-Chr4 40419591 40424129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3438 1 440 C2H2 Transcription Factor Family AT5G18550 55.921 5.47e-149 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr4g3438 zf-CCCH 1.5e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3438 - - mtr:MTR_4g119280 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3438 4 40419591 40424129 Tpr4g3438 4 40419591 40424129 ECH
Tpr4g3438 4 40419591 40424129 Tpr7g2784 7 35085640 35090890 PCT