Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3437 ATGGAGGAATCAACTTCCGATAACGATAGACACAAAATCCGCAACATATGCATCTTAGCACATGTAGACCACGGCAAAACAACCCTGGCTGATCAGCTTATCGCCACCGCCGGCGGCGGCATGGTTCATCCAAAAGTAGCAGGTAAACTCCGTTTCATGGATTTCCTCGACGAAGAACAACGTCGTGCTATAACAATGAAAAGTTCATCTATTTCTCTTAACTACAATCACCACACAATTAATCTAATCGATTCCCCCGGTCATATCGATTTTTGCGGCGAAGTTTCCACCGCCGCTCGTCTTTCCGATGGAGCACTTATTCTTGTTGATGCTGTTGAAGGTGTTCATATTCAAACTCACGCTGTTCTTCGTCAATGTTGGATTGAACGTCTTTCACCTTGTCTTGTTCTTAATAAGATGGATAGGTTAATTACTGAGTTGAAACTTACTCCTTCTGAAGCTTATGTTCGTTTATTGAGGATTGTTCATGAGGTTAATAGTATTGTTAGTGCTTATAATTCACAGAAATATTTATCTGATGTTGATTCTCTTCTTGCTGGTGGTACTGCTGATGGTGGTGAAGTTATGGAGGATTATGATGATGTTGAAGATGTTTTTCAGCCTCAGAAAGGGAATGTTGTGTTTGCTTGTGCTTTGGATGGTTGGGGTTTTGGGATTCATGAATTTGCAGAGATTTATGCTTCAAAGCTTGGTGCTAGTGTTAGTGCATTACAGAGGGCTTTATGGGGTCCAAGATATTTTAATCCTAAGACTAAGATGATTGTTGGGAAGAAAGGGATTGGTGCTGGTAGTAAGCCTATGTTCGTTCAGTTTGTGTTGGAGCCTCTTTGGCAGCTTTATCAAGGATCACTTGAAGGGGATAAAGGGTTGATTGAGAAGGTTATTAAGGCTTTTAATTTACAGGTTCCGGCGCGTGAGTTGCAGAATAAGGATTCTAAGGTTGTGCTTCAAGCTGTTATGAGTCGTTGGCTTCCTCTTTCGGATGCTATTTTGTCTATGGTGGTGAAGTGTATGCCGGATCCTGTGGCAGCGCAGGGTTCTAGGATATCGCGGTTGATTCCACAGCGTGAGGTTGGTTCTGGAGATGGGGTTGATAGGAGGGTAGTGGAAGAGGCGGAGCTTGTGAGGAAGTCGGTGGAGGGGTGTGATTGGAGGGATGAGGTTCCTTGTGTTGCATTTGTGGCGAAAATGTTTGCTCTACCTGTTAAAATGCTTCCTCCTCCTCAAGTAGGGGAGGTTGTGGGGAGTTTTGGTGAGGAAGGTGAGGGTGAATCTGATGAGTGTTTTTTGGCATTTGCTAGGATATTTAGTGGTGTTTTGTCTGTTGGGCAGAGAGTTTTTGTGATTTCGGCTTTGTATGATCCTTTGAAAGGGGAATCGACGCAAAAGCATATACAGGAGGCTGAATTGAAATCCATGTATCTGATGATGGGGCAAGGGTTGCAAGTAGTGAAATCTGCGAAAGCAGGAGATGTTGTTGCAATCCGAGGACTTGGCCAATATATTTTGAAAAGTGCTACACTTTCTTCTACTAGGAACTGTTGGCCTTTTTCGAGTATGGCTTTTCAAGTTTCCCCGATTTTGAGGGTTGCTATTGAGCCATCTGACCCTGCAGATATGGGTGCACTGCTCAAAGGCCTGAGGCTTTTAAATCGAGCGGATCCGTTTGTTGAGGTCACAGTTTCTGCAAGAGGAGAGCATGTTCTTGCTGCAGCTGGTGAAGTTCATCTTGAGAGATGCATAAAGGATTTGAAGGATAGGTTTGCAAAAGTAAGCTTGGAAGTCTCTCCACCCCTTGTGTCCTACAAAGAGACCATTGAGGGAGAGGTATCCAACATGCTGGAAAATTTGAAAGTTCTCAGCAAGAACTTAGATTATGTTGAGAAAACAACACCCAATGGAAGATGCATTGTACGTGTACAGGTGATGAAACTTTTACCTTCTCTCACAAAGGTTCTTGATGAAAGTGCTGATATACTTGGAGATATCATTGGAATAAAGTCAGGGCAGACAGTTAAAAGTTTAGAAACTCAGGGGACAAATATTCTCGAAAATGGGAATCCAGCTGAAGTGATTAAAACACGTATAATGGATGCAATTGAGAGTGACATTTTGTGTAGGATTGAGAATGATGAAGACCATGCCGAGAAATGTAGATTGAAGTGGTTAAAGCTTTTGAGGAGGATATGGGCACTTGGTCCGAGTTACATGGGCGCTAACGTTCTCTTCACTCCTGATATTAAAGCAGAGAGTAGTGATAGCTCTGTTCTAATACGTGGTTCTTCTCAACTATCTGAAAGGTTGGGTTTTGTGGCTGATTCTGCTAACAGTAACTCGGTTTCAGAGGCATCTTCAAATGAGAGCCAAGCGTTGTATATGGATGCAGAGCGTCTCGAGAGTAATGTTATAACCGGGTTCCAACTTGCAACTTCAGCTGGGCCTTTATGCGATGAACCTATGTGGGGTCTGGCATTTGTCATTGAGGCACGAATAACTCCATCTACAGGACATGATGAATCCGAAACACACCAACAATCCGACCAGTATGGCATCTTTGCAGGGCAGGTTATTGCAACAGTCAAAGATGCCTGTAGGACAGCTGTGCTAAAGAATAAGCCAAGGCTTGTGGAAGCAATGTACTTCTGTGAATTGAATACCCCTAATGAATTTTTGGGTCCCATGTATGGTGTACTTTCCCGCAGACGGGCTCGAATTTTGAAAGAAGAGATGCAGGAAGGTTCCCCTTTATTCACTGTGCATGCATATGTTCCTGTTTCTGAGAGCTTTGGTTTTACTGATGAGCTTAGAAGTAGGACTTCTGGCGCTGCGAGTGCAATTCTTGTCCTTAGCCACTGGGAAGCACTACTCGAAGATCCTTTCTTTGTACCTAAAACAGAAGAGGAAATCGAAGAGCATGGAAATGGTTCCAGTGTTCTTCCAAATACAGCAAGAAAGTTGATTGACACAGTCAGACGGCGGAAGGGCCTTCATGTCGAGGAAAAGGTAGTACAACACGGAACAAAGCAGAGGACACTCGCTCGGAAAGTTTGA 3072 0.4359 MEESTSDNDRHKIRNICILAHVDHGKTTLADQLIATAGGGMVHPKVAGKLRFMDFLDEEQRRAITMKSSSISLNYNHHTINLIDSPGHIDFCGEVSTAARLSDGALILVDAVEGVHIQTHAVLRQCWIERLSPCLVLNKMDRLITELKLTPSEAYVRLLRIVHEVNSIVSAYNSQKYLSDVDSLLAGGTADGGEVMEDYDDVEDVFQPQKGNVVFACALDGWGFGIHEFAEIYASKLGASVSALQRALWGPRYFNPKTKMIVGKKGIGAGSKPMFVQFVLEPLWQLYQGSLEGDKGLIEKVIKAFNLQVPARELQNKDSKVVLQAVMSRWLPLSDAILSMVVKCMPDPVAAQGSRISRLIPQREVGSGDGVDRRVVEEAELVRKSVEGCDWRDEVPCVAFVAKMFALPVKMLPPPQVGEVVGSFGEEGEGESDECFLAFARIFSGVLSVGQRVFVISALYDPLKGESTQKHIQEAELKSMYLMMGQGLQVVKSAKAGDVVAIRGLGQYILKSATLSSTRNCWPFSSMAFQVSPILRVAIEPSDPADMGALLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCIKDLKDRFAKVSLEVSPPLVSYKETIEGEVSNMLENLKVLSKNLDYVEKTTPNGRCIVRVQVMKLLPSLTKVLDESADILGDIIGIKSGQTVKSLETQGTNILENGNPAEVIKTRIMDAIESDILCRIENDEDHAEKCRLKWLKLLRRIWALGPSYMGANVLFTPDIKAESSDSSVLIRGSSQLSERLGFVADSANSNSVSEASSNESQALYMDAERLESNVITGFQLATSAGPLCDEPMWGLAFVIEARITPSTGHDESETHQQSDQYGIFAGQVIATVKDACRTAVLKNKPRLVEAMYFCELNTPNEFLGPMYGVLSRRRARILKEEMQEGSPLFTVHAYVPVSESFGFTDELRSRTSGAASAILVLSHWEALLEDPFFVPKTEEEIEEHGNGSSVLPNTARKLIDTVRRRKGLHVEEKVVQHGTKQRTLARKV* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3437 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 346 IPR027417 -
Tpr4g3437 1023 Pfam Elongation factor Tu domain 2 437 515 IPR004161 GO:0005525
Tpr4g3437 1023 SUPERFAMILY Ribosomal protein S5 domain 2-like 607 883 IPR020568 -
Tpr4g3437 1023 CDD EF2_II 396 518 - -
Tpr4g3437 1023 SUPERFAMILY EF-G C-terminal domain-like 884 982 IPR035647 -
Tpr4g3437 1023 Coils Coil 610 630 - -
Tpr4g3437 1023 Gene3D - 4 207 IPR027417 -
Tpr4g3437 1023 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 7 1022 - -
Tpr4g3437 1023 SUPERFAMILY Translation proteins 389 527 IPR009000 -
Tpr4g3437 1023 CDD EF2_snRNP_III 533 604 - -
Tpr4g3437 1023 Gene3D Yeast translation eEF2 (G' domain) 226 331 - -
Tpr4g3437 1023 Pfam Elongation factor Tu GTP binding domain 12 342 IPR000795 GO:0003924|GO:0005525
Tpr4g3437 1023 CDD eEF2_snRNP_like_C 884 962 - -
Tpr4g3437 1023 Pfam Elongation factor G C-terminus 882 962 IPR000640 -
Tpr4g3437 1023 PANTHER ELONGATION FACTOR-LIKE GTPASE 1 7 1022 - -
Tpr4g3437 1023 SMART EFG_C_a 881 970 IPR000640 -
Tpr4g3437 1023 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 11 248 IPR000795 GO:0003924|GO:0005525
Tpr4g3437 1023 CDD EF2 14 234 - -
Tpr4g3437 1023 Gene3D - 629 878 IPR014721 -
Tpr4g3437 1023 Gene3D Translation factors 348 530 - -
Tpr4g3437 1023 CDD aeEF2_snRNP_like_IV 604 888 - -
Tpr4g3437 1023 PRINTS GTP-binding elongation factor signature 15 28 IPR000795 GO:0003924|GO:0005525
Tpr4g3437 1023 PRINTS GTP-binding elongation factor signature 61 69 IPR000795 GO:0003924|GO:0005525
Tpr4g3437 1023 PRINTS GTP-binding elongation factor signature 81 91 IPR000795 GO:0003924|GO:0005525
Tpr4g3437 1023 PRINTS GTP-binding elongation factor signature 97 108 IPR000795 GO:0003924|GO:0005525
Tpr4g3437 1023 PRINTS GTP-binding elongation factor signature 133 142 IPR000795 GO:0003924|GO:0005525
Tpr4g3437 1023 SUPERFAMILY EF-G C-terminal domain-like 530 605 IPR035647 -
Tpr4g3437 1023 Gene3D Elongation Factor G (Translational Gtpase), domain 3 532 608 - -
Tpr4g3437 1023 Gene3D - 880 1014 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3437 Tpr-Chr4 40409696 40413069 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3437 7 1023 Eukaryotic Initiation Factors Gene Family AT3G22980 68.671 0.0 1433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3437 K14536 - pvu:PHAVU_003G003900g 1639.4