Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3436 ATGGGCCCTACCAGGAAATCCAGAAGTGTAAATAAGAAGTTCTCTCGTGAGGCCGAATCTCGTAAAGATAAAGATGCAGCAAATACCAGTAAGAATCGGCAGAAGGCTAGCGCTAGTCCTGGTACTCAAAAGAAGAGAAAATTGGCCGACATGTTAGGATCACAATGGAGTAAGGCGGAGCTTGAACGTTTCTATGATGCTTACCGTGAATATGGGAAAGATTGGAAGAAGGTTGCTCTTGCAGTACGTAATAGGACCATGGAAATGGTAGAAGCCCTGTACACTATGAACAGGGCATACTTATCTCTTCCAGAGGGCACTGCTTCTGTTGTTGGACTGATAGCAATGATGACAGATCATTATAGTATACTGGGCGGAAGTGACAGTGGAAAAGAAAGCAACGAAGACACAGAAGTACGTAAAAAGTCTAAAAAACGTCCACGGGGAAAGCCAAATGACAATAAAGTAGTAGATGGACACTTTTCAGATCATTCTCAGCCACAATCTGTTGCATCAGACGATGGTTGCCTGTCATTGTTGAAGAATAGGCATTCTGGAATTAGGCCTCATGCTGTTCGAAAAAGGACTCCTCGTGTCCCTATTTCATATTCTATTGGCAAAGATAATGGGGGAAAGTTTTTTTCATCTGCTAGGCAGGACTCCAAACAAATGGTTGATACAAATGATGTCACTCACAAAATTGCATTAGTATTGGCAGAGGCTTCACAACGAGGTGGTTCTTCAAAAAAAATTGGATCGCCAAAGAAGAAAAACATGCCATCACCCAAGCTTAAAATTGGGAAGAAGCATGTTAAACCAGAAATAGTCAGAGCCAAATTCGGCAACACTGACATGGATGAGGGTAGTTCTGAGTTGAGTTTAGGAAGTACAGAAGGTGATAATGAAGATTATTCTAGAAAGTTAATTCATCGGAGCAGTAGAGAAAATACTGGAAGAGGAAAGAATCAGGAAAAGGGAATAAAACGCTACAGAAAGAATTTAGAACCCGAGGAAAATATAAACAAGCATTTGAATGACATAAAAGAGGCCTCCAGTGAGACCGATGATAAGTCCAATTTTGACACAGATTTTGCAAATGCAAAAAGTGTGAGGTCTTCATACAAGGGTCCCAGAAAGAAAAGTAAAACATTACATTTTGAGAAAGATGAAGGTTCGGCTTTCGATGCTCTGAAAACTTTGGCTGATCTATCTTTGATGATGCCATCAACAAACCTCGACACTGAATCATCTGTGCAGTTCAACGAAGGAAACCATGATGTGGTTGATGAGTCTAAAATGGAAACAGATAATGGAAATAGTTCGAGAAAACGGGGAAAGGTTTTTTCTGATAAAGGAACTGCTGCTCCCAAAGCAGAGGTAGCGTACCAGCTTAATGCAGGAAGCAGGAAAAGAAAACAAAAATCGTTCGCCTTAAAGAATGATGAAACACATACTGGTTCTCATTTAAGTGGTTCCCAGAAAATCAAGATTACTGATGAGGTGAAGTCCATGGTGAAAGGCAAGCGATCATCTGTCAGTACAGCTCATTCCAGACAACTAAAAATGCCGAAATCTCTAGGACATATCTCTCCTTCAAATGATATTGACAAAGCAAGAAGAGATGATTCATCTATTTCCCCCATAAAAGTTTTGTCTAATAACACAGTCGGTCAAGTAAACAGAGACCGACCCAGAAGAAAGATGGGAAAACCAAAACCAATGGTACAAAAAGATCATACAGTGTCTGAAAAATCCATTGCTTCGTACCGGTGGAATAGTATTGAACGTCACAAGGGAAAGCTTATTAATTGTTTGTCTTCATATCAAATGCGGCGATGGTGCACCTCTGAATGGTTTTATAGTGCTATTGATTATCCATGGTTTTCAAAGAGAGAGTTTGTAGAATACTTAGACCATGTTGGACTGGGTCATGTTCCCAGATTGACTCGTATTGAGTGGGGAGTCATTAGAAGTTCACTTGGTAGACCACGAAGATTTTCAGAGCAATTTTTGATGGAAGAAAAACATAAACTTAATCAGTACCGAGAATCTGTCAGATCACATTATGCTGAAGTTCTTGCTGGTACCAAGGAAGGGCTACCTGCTGATTTGGCCCAGCCATTAATTGTTGGGCAGCGTGTTATTGCTATTCATCCAAAGACAAGGGAAATTCATGATGGAAGCATACTGACTGTTGACCATTGTAGATACCGGGTTCAGTTTGACCACCATGAACTCGGGGTTGAATTTGTCATGGATATTGACTGCATGCCTTTGTATCCATCTGAGAATATGCCCATGTCTCTGATAAGACACCATATCACTCCTTCTAGAATAAATGAGAACCTTAGTGAGCTTACGCGTAATGGGAAAATGACACAAAGAAAGATCTCCGAGAACACAATGTTGTCCCCAAGTGGTAACTCAAATGCCATAAAAGGTCATTGTGTACCACCCACTATGCATGGGTTTTCTTCAAGCTGCAAATCACAAGCAAAAGCTGCAGGCAGTGAGATTTGTAATGGCCAATCAGCATCAAGTTCTCAATCTTCCTTTCTTGAAAGACTCCATTCAAAAGAAGCTGATATATTAGCTATTTCAGAATTGACTCGTGCTCTAGAAAAGAAGGAACTTGTGTTGTCTGAACTGAAGCACATGAATGATGGGGTATCAGAAAGCCAGAAATACGGAGACAACTCGGTGAAAGATTCGGAACCTTTTAAAAGGAATTATGCTTCAGTACTAAAGCAATTATCTGAAGCAAATGAACAGGTTTCTTCTCGCTTGTTTTGCTTGAGGCAACGGAATGCATATCAAGCAAGCTCCTCAGTTTTGTCTTTGAAGCCCATGGCAAATTTTGATGATCCTGGTGGTCAGGCTAGCTCTTCCAATTGTTCATCTTGCCACAACCAAGAATCTATATCTCAAAGTCATATAGCTGAAATTGTTGAAAGTTCTAGAAGAAAAGCCCGAACCATGGTCGTTCAAGCTGCTCAGGCAATGTCAGTTTTTAGAAAGACAGAAAAGTTTGAAAGAAATGAGGATGCAATAAATTTTATCAATAACCGGATTTCGGTCGATGACTCTACTGCTTCAGCCACAAGTTTTCTTCCCCTAGATTCTATTACTTTGGCTTCTCGGGATCAATTGGCTGCTAGCAGCACGTTGAACATTTTGGCAAGGTGTCATGTACAAGATGATGAACTTAACAGTTCGTCTGACCAAAATGAAATGAAAATCCCCTCAGAACTCATATCTCATTGTCTAGCTACACTGCTCATGATTCAGAAGTGTACGGAACGACAATTTCCCCCAGCTGATGTTGCACAGGTATTAGATTCTGCCGTCACCAGTTTGCAGCCATTTTGTTCAAAGAATCTTCCAATATATGGCGAGATACAGAAATGCATGGGTATCATAAGAAATCAGATACTGGCACTCGTACCTACCTAG 3453 0.4057 MGPTRKSRSVNKKFSREAESRKDKDAANTSKNRQKASASPGTQKKRKLADMLGSQWSKAELERFYDAYREYGKDWKKVALAVRNRTMEMVEALYTMNRAYLSLPEGTASVVGLIAMMTDHYSILGGSDSGKESNEDTEVRKKSKKRPRGKPNDNKVVDGHFSDHSQPQSVASDDGCLSLLKNRHSGIRPHAVRKRTPRVPISYSIGKDNGGKFFSSARQDSKQMVDTNDVTHKIALVLAEASQRGGSSKKIGSPKKKNMPSPKLKIGKKHVKPEIVRAKFGNTDMDEGSSELSLGSTEGDNEDYSRKLIHRSSRENTGRGKNQEKGIKRYRKNLEPEENINKHLNDIKEASSETDDKSNFDTDFANAKSVRSSYKGPRKKSKTLHFEKDEGSAFDALKTLADLSLMMPSTNLDTESSVQFNEGNHDVVDESKMETDNGNSSRKRGKVFSDKGTAAPKAEVAYQLNAGSRKRKQKSFALKNDETHTGSHLSGSQKIKITDEVKSMVKGKRSSVSTAHSRQLKMPKSLGHISPSNDIDKARRDDSSISPIKVLSNNTVGQVNRDRPRRKMGKPKPMVQKDHTVSEKSIASYRWNSIERHKGKLINCLSSYQMRRWCTSEWFYSAIDYPWFSKREFVEYLDHVGLGHVPRLTRIEWGVIRSSLGRPRRFSEQFLMEEKHKLNQYRESVRSHYAEVLAGTKEGLPADLAQPLIVGQRVIAIHPKTREIHDGSILTVDHCRYRVQFDHHELGVEFVMDIDCMPLYPSENMPMSLIRHHITPSRINENLSELTRNGKMTQRKISENTMLSPSGNSNAIKGHCVPPTMHGFSSSCKSQAKAAGSEICNGQSASSSQSSFLERLHSKEADILAISELTRALEKKELVLSELKHMNDGVSESQKYGDNSVKDSEPFKRNYASVLKQLSEANEQVSSRLFCLRQRNAYQASSSVLSLKPMANFDDPGGQASSSNCSSCHNQESISQSHIAEIVESSRRKARTMVVQAAQAMSVFRKTEKFERNEDAINFINNRISVDDSTASATSFLPLDSITLASRDQLAASSTLNILARCHVQDDELNSSSDQNEMKIPSELISHCLATLLMIQKCTERQFPPADVAQVLDSAVTSLQPFCSKNLPIYGEIQKCMGIIRNQILALVPT* 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3436 1150 Pfam DIRP 618 719 IPR033471 -
Tpr4g3436 1150 MobiDBLite consensus disorder prediction 425 450 - -
Tpr4g3436 1150 MobiDBLite consensus disorder prediction 560 579 - -
Tpr4g3436 1150 MobiDBLite consensus disorder prediction 300 340 - -
Tpr4g3436 1150 Coils Coil 866 886 - -
Tpr4g3436 1150 MobiDBLite consensus disorder prediction 422 579 - -
Tpr4g3436 1150 PANTHER LIN-9 1 1150 IPR010561 GO:0006351|GO:0017053
Tpr4g3436 1150 SUPERFAMILY Homeodomain-like 51 99 IPR009057 -
Tpr4g3436 1150 SMART DIRP_2 619 720 IPR033471 -
Tpr4g3436 1150 MobiDBLite consensus disorder prediction 1 50 - -
Tpr4g3436 1150 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 1150 IPR028306 -
Tpr4g3436 1150 MobiDBLite consensus disorder prediction 10 30 - -
Tpr4g3436 1150 MobiDBLite consensus disorder prediction 281 340 - -
Tpr4g3436 1150 CDD SANT 56 90 IPR001005 -
Tpr4g3436 1150 Gene3D - 4 108 - -
Tpr4g3436 1150 MobiDBLite consensus disorder prediction 482 497 - -
Tpr4g3436 1150 MobiDBLite consensus disorder prediction 126 172 - -
Tpr4g3436 1150 Pfam Myb-like DNA-binding domain 54 90 IPR001005 -
Tpr4g3436 1150 SMART sant 52 100 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3436 Tpr-Chr4 40392435 40406248 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr4g3436 DIRP 8.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3436 - - gmx:100781646 1675.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3436 4 40392435 40406248 Tpr4g3436 4 40392435 40406248 ECH