Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3426 ATGGTGATTCAACACGTAGCTTTTGAAAAATCACAGTGGGTCACTGTGATTCCAGATACTAGGGCAAATTCCATGAAACCTATAGAGAAGAAGAAAAGTTTAGCTTCAACTTCTAATTCTTGTAAAGTTTATGATAAACCAAAGGGACTTCATCAAGAAGGATCAACAAGTTCAAAAATTTACAAGTGTGAATTTTGTAACAAAATTTTTGGTTGTGGAAAAGCATTAGGTGGTCACAAAAGATTTCATCTTCAACTTCTAAGGAAAGAGAATGAGGCTAAAGCTAGGGTTAGTTTCAACTCTTCTAATTATGATGGAAAACAAATATGTCATGTTTGCAAGAAGAATTTTTCATCTAATAAAGCTTTATATGGTCACATGAGATCTCACCCCGAAAGGGAATGGAGGGGTATTCACCCTAATAAGTTTAATTATAATATTGATTATGATTATGATGATGATGATGATAATCATGATCAAGATCAATATTTTATTGGTGCACCTAAAAAATTGGTTATTGATGATGATGAATCAATAACTTGGCCACCAAGATTTATTAAAACCAATAAAAGGGGTCGAAGCTATGAAGTTGATAATGCTGCTCAAATACTCATGCATATGTCTAGGGCTAAAATTTTAGAAGAAAAGCTTAATGAGAATTTGGATTATGAGGAGAAAGTGTTACCTAGTACTACTAGTGGTACTCTAGTTGATGACAATATTGATGAAACAAAATTGAAGAAAAGGAAGATGTTGGTGAAATTAAAGAATCCATTTTTAGCATCTAAAGAGAAGAATCTTAATAGGTATCAATGTGAGATTGGGGAATCAAGTCAATCAAAATCAAGAATTGTTCGAGCTTTTGATTTGAACGAGTGA 879 0.3242 MVIQHVAFEKSQWVTVIPDTRANSMKPIEKKKSLASTSNSCKVYDKPKGLHQEGSTSSKIYKCEFCNKIFGCGKALGGHKRFHLQLLRKENEAKARVSFNSSNYDGKQICHVCKKNFSSNKALYGHMRSHPEREWRGIHPNKFNYNIDYDYDDDDDNHDQDQYFIGAPKKLVIDDDESITWPPRFIKTNKRGRSYEVDNAAQILMHMSRAKILEEKLNENLDYEEKVLPSTTSGTLVDDNIDETKLKKRKMLVKLKNPFLASKEKNLNRYQCEIGESSQSKSRIVRAFDLNE* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3426 292 Pfam C2H2-type zinc finger 109 132 - -
Tpr4g3426 292 Pfam C2H2-type zinc finger 61 84 - -
Tpr4g3426 292 Gene3D Classic Zinc Finger 54 137 - -
Tpr4g3426 292 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 32 277 IPR044653 GO:0003700
Tpr4g3426 292 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Tpr4g3426 292 SUPERFAMILY beta-beta-alpha zinc fingers 56 84 IPR036236 -
Tpr4g3426 292 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 32 277 - -
Tpr4g3426 292 SUPERFAMILY beta-beta-alpha zinc fingers 109 133 IPR036236 -
Tpr4g3426 292 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Tpr4g3426 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Tpr4g3426 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Tpr4g3426 292 SMART c2h2final6 61 83 IPR013087 -
Tpr4g3426 292 SMART c2h2final6 108 130 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3426 63 146 C2H2 Transcription Factor Family AT2G26940 32.743 5.60e-13 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr4g3426 zf-C2H2_6 1.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3426 - - mtr:MTR_5g098470 259.61