Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3425 ATGTCATCATCTTCGAAGCAAGAAAAAAACAATGATGGTGATAGTAATAATAATACTAATAGATCGTTGAAAAAAGGAACATGGTCAAAAGATGAGGATAAAATATTGGTAGATTATGTGACAAAATATGGAGCTAGAAAGTGGAATGAAGTACAAAAGAGAACGGAACTTGCTCGAAGTGGAAATTGTTGTCGTTTTAGATGGATAAATCACTTACAGCCAGGTGTGGTAAAGGGAAAATTTAGTGAACATGAAGCAAAAGAAGTCATTCGGATGAAAAAGCTTAATCTCAAATGGTGTGACATGGCTAAACAGTTGCCTGGAAGATCAGATAATGATATAAAGAATTTCTGGAATGCAAGAGAAAGAAAACTAAATAGAGAGAATAGTTTGAATGGTTCCAGCAGTTTGAGTCATGATCATGAGTTGAATGACAATAGAGAGAAGAGTTTGAGTGGTTCTACTTCTACCAGCCAGCAAGTTGATTCACAAGATGACAAATACTCTAAACAATTTCCAAAATTATTTGATGATTCAAATAAGCAGCTTCCAAAGTTTCCAAAGTTGGTTAATGATTCAAACATGTTCTACACCAATGTGGGAAGTACTTCTATAAGCAATCATACTACTCCATCAGGGATTAATAGGGCTGGCATTGGAACTTCTTTTATGCATGAGGCCAGGGTACCAAATCCATCTTCATTATCACCATATTTAAACTTTCAAAATATGTACAATCCACTTCCTTCAATTGAACACAAGTTGCATAGAAAATATCCATCAAGATATGATGAGATAAATGCAAAATTATTTGATGTTTCAAATAAGGAGCTTCCAAAGTGGGTTGATGATTCAAAGATGCCCTACTATTGTGTGGGAAGTACTTCTACAAGCAAACATACTACCCCAACATGGACTAATAGGGTTGGCAATGGAACTTCTAGTAATCAATTTACCATGGTGCCAAATCCACTCCCACCATGTTCATACGTTCAAAATATGGACTATCAACTTCCTTCTTATAAGAAGTTAGGTGAGTATCCTCAAAATCCACTTCCACCACCTAAGGAGGCTCAATATCAGAGGACAGGATCAGTTTCTCCATATAATGCTAGTCGCGTTCGTTCGTCTAAGGTAAATTTGGTTGATGAAAATGGGAAGAAGCCAATTTCTTTTGAGAATGATTTTGGAGCAAATTCCCTTCGCAATTTTACAGATTCATATCTTCGCCGTGCCTCAAGTTTATTAGACAATGGCAATAACAATAACTTGAATGACAAGCTTCCACACGATGTAAAGGATACATTAAACACAGCTATAAATGAAAAGGGCATAGACTGGGATCGTTTTTCTTACTTTGGTTCATTTGACAACAACTTTAACAATAACTTGCATGACAAGATTCCGCACAATAATGACAAGATTCTAGACGATATAAAGGATACCTTAGGTGCAGCTTTACATGGAAAAGGCATAGATTCGGATCATTTTCCTGACTTAAGTTCATCAGACAACGACGATAACAATAACTTGCATGACAAGATTCCACACAATATGAAGGATACCTTAGACGCGGTTATATATGGAAAAAGCTTCCATCCTAAGTGA 1608 0.3607 MSSSSKQEKNNDGDSNNNTNRSLKKGTWSKDEDKILVDYVTKYGARKWNEVQKRTELARSGNCCRFRWINHLQPGVVKGKFSEHEAKEVIRMKKLNLKWCDMAKQLPGRSDNDIKNFWNARERKLNRENSLNGSSSLSHDHELNDNREKSLSGSTSTSQQVDSQDDKYSKQFPKLFDDSNKQLPKFPKLVNDSNMFYTNVGSTSISNHTTPSGINRAGIGTSFMHEARVPNPSSLSPYLNFQNMYNPLPSIEHKLHRKYPSRYDEINAKLFDVSNKELPKWVDDSKMPYYCVGSTSTSKHTTPTWTNRVGNGTSSNQFTMVPNPLPPCSYVQNMDYQLPSYKKLGEYPQNPLPPPKEAQYQRTGSVSPYNASRVRSSKVNLVDENGKKPISFENDFGANSLRNFTDSYLRRASSLLDNGNNNNLNDKLPHDVKDTLNTAINEKGIDWDRFSYFGSFDNNFNNNLHDKIPHNNDKILDDIKDTLGAALHGKGIDSDHFPDLSSSDNDDNNNLHDKIPHNMKDTLDAVIYGKSFHPK* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3425 535 SUPERFAMILY Homeodomain-like 25 121 IPR009057 -
Tpr4g3425 535 MobiDBLite consensus disorder prediction 149 166 - -
Tpr4g3425 535 Gene3D - 79 145 - -
Tpr4g3425 535 MobiDBLite consensus disorder prediction 128 167 - -
Tpr4g3425 535 CDD SANT 27 72 IPR001005 -
Tpr4g3425 535 MobiDBLite consensus disorder prediction 1 24 - -
Tpr4g3425 535 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 76 IPR017930 -
Tpr4g3425 535 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 475 - -
Tpr4g3425 535 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Tpr4g3425 535 PANTHER MYB DNA-BINDING DOMAIN PROTEIN 1 475 - -
Tpr4g3425 535 SMART sant 77 124 IPR001005 -
Tpr4g3425 535 SMART sant 24 74 IPR001005 -
Tpr4g3425 535 Gene3D - 24 77 - -
Tpr4g3425 535 MobiDBLite consensus disorder prediction 1 27 - -
Tpr4g3425 535 Pfam Myb-like DNA-binding domain 28 87 - -
Tpr4g3425 535 ProSiteProfiles Myb-like domain profile. 73 122 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3425 Tpr-Chr4 40304741 40307808 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3425 6 172 MYB Transcription Factor Family AT2G26960 38.690 4.14e-34 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr4g3425 Myb_DNA-bind_6 1.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3425 K09422 - mtr:MTR_5g088610 181.415