Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3423 ATGGCTGTTACCTTCTCAGATCTACACACAGAGGAAGGTCTCAAATCCCTCAATGAATTCCTCTCTGGAAAAACCTATATTTCTGGGGATCAATTGACAAAGGATGATATCAAAGTGTATGGAGCTGTTACTGAAAAGCCAAGTGGTTCTTTTCCTAATGCTGCTACTTGGTATGATGCTGTTTCTTCAAAGCTTGCTGCAAGTTTCCCTGGAAAAGCTCAAGGTGTGAAATTCACTGGAAGTGCTGCTTCAGCTGCTGCAGCACCTGCTCAAGCGGCTGCACCAGCTGCTGAAGAAGATGATGATGATCTTGACCTCTTTGGTGATGAAACAGAAGAGGATAAGAAGGCAGCAGAGGAAAGAGAGGCTTCTAAGAAGCCCGCCAAGAAGAAAGAAAGTGGTAAATCTTCCATTCTGCTCGATGTTAAGCCTTGGGATGACGAGACTGACATGAAGAAGCTCGAAGAGGCTGTTCGCAGTGTTGAGATTGAAGGTTTAACCTGGGGAGCATCTAAGTTGGTTGCTGTCGGATACGGAATCAAGAAGTTGCAGATCATGTTGACCATTATCGACGATCTTGTATCTGTGGACGACCTCATTGAAGAAAAACTCACCGTTGAGCCAATTAACGAGTATGTCCAGAGTTGCGACATTGTTGCATTCAACAAAATTTAA 675 0.4415 MAVTFSDLHTEEGLKSLNEFLSGKTYISGDQLTKDDIKVYGAVTEKPSGSFPNAATWYDAVSSKLAASFPGKAQGVKFTGSAASAAAAPAQAAAPAAEEDDDDLDLFGDETEEDKKAAEEREASKKPAKKKESGKSSILLDVKPWDDETDMKKLEEAVRSVEIEGLTWGASKLVAVGYGIKKLQIMLTIIDDLVSVDDLIEEKLTVEPINEYVQSCDIVAFNKI* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3423 224 SUPERFAMILY GST C-terminal domain-like 10 66 IPR036282 -
Tpr4g3423 224 PANTHER TRANSLATION ELONGATION FACTOR EF1B/RIBOSOMAL PROTEIN S6-RELATED 1 224 - -
Tpr4g3423 224 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 224 - -
Tpr4g3423 224 SMART EF1_GNE_2 135 224 IPR014038 GO:0003746|GO:0006414
Tpr4g3423 224 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 100 108 IPR001326 GO:0003746|GO:0005853|GO:0006414
Tpr4g3423 224 Gene3D - 128 224 IPR014717 -
Tpr4g3423 224 CDD EF1B 133 224 IPR014038 GO:0003746|GO:0006414
Tpr4g3423 224 MobiDBLite consensus disorder prediction 112 132 - -
Tpr4g3423 224 SUPERFAMILY eEF-1beta-like 132 224 IPR036219 -
Tpr4g3423 224 Pfam EF-1 guanine nucleotide exchange domain 137 224 IPR014038 GO:0003746|GO:0006414
Tpr4g3423 224 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 213 224 IPR001326 GO:0003746|GO:0005853|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3423 Tpr-Chr4 40295555 40298262 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3423 1 224 Eukaryotic Initiation Factors Gene Family AT5G12110 70.614 4.15e-103 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3423 K03232 - gmx:100816855 305.064