Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr4g3422 | ATGTCAAGTGGAGCAACACACTGGTGTTATGAATGCAGTCGGCCAATTGTGCTTGAAGGGAGAGACGCCGTTTGCCCTTACTGTGACGATGGATTTGTACAAGAACTTGATGAGATGAGAGGCATTGCACCTCAAAATACCCTTCCGTCACGCTCGGCAGAGCTTCATCAAATGCCTGATTTATTTGATGCTCTACATGCTTTTGTGGGGAACAGAGGTTCCGAAAACAGGTTTGGGCTTATGGACGCTGTTGATAATTTCATGAGGCATAGAATGGCTGGAATGCACCCAAACTTTGATGTTAGAGGGAGGACCAGTTCTTCTGTCCCGGTTCCTGAACAGAGTTGGGGTGTTTATAGTTCTGGTCCTTTTTTAGTATTTCATGGCCAAGTTCCTGGATTAAACTTGCCTAATGGAAGCCCAAGAGGTGGTCCAAGGCGTGGTGATTTTGGTGACTACTTTATGGGTTCTGGACTTGAAGAGCTTATTGAACAACTCACCATGAATGATCGGCGTGGTCCTCCCCCAGCTGCACGGTCTTCAATTGATGCAATGCCTACTATTAGGATCACACAGGCACATCTTCGCTCCGATTCACATTGTCCAGTTTGTAAAGAAAAATTTGAACTTGGTTCTGAAGCCAGAGAGATGCCATGTGACCATATTTACCATTCCGACTGTATTGTTCCTTGGTTGGTTGAGCATAACTCGTGCCCTGTTTGCCGTGTTGAGCTGCCACCACACGGACAAGTTAGTTCTCGTGCAAGTAGTCGAAGCAACAACAGTGGAAATGGTAGCTCAAGGGGAAGGGAGAGTGACCGTCCAAACAATGGAAGGAGAAATCCATTTTCGTTTCTGTGGCCGTTCCGCTCTTCTAGTTCAAACAATAATCAATATTCTGATACTGGAGGAAGCAGCTCTTCAACCAATGCTGACCAGAATAACGGAACAAGTTATCATGGATGGCACTACGATAACTAA | 981 | 0.4577 | MSSGATHWCYECSRPIVLEGRDAVCPYCDDGFVQELDEMRGIAPQNTLPSRSAELHQMPDLFDALHAFVGNRGSENRFGLMDAVDNFMRHRMAGMHPNFDVRGRTSSSVPVPEQSWGVYSSGPFLVFHGQVPGLNLPNGSPRGGPRRGDFGDYFMGSGLEELIEQLTMNDRRGPPPAARSSIDAMPTIRITQAHLRSDSHCPVCKEKFELGSEAREMPCDHIYHSDCIVPWLVEHNSCPVCRVELPPHGQVSSRASSRSNNSGNGSSRGRESDRPNNGRRNPFSFLWPFRSSSSNNNQYSDTGGSSSSTNADQNNGTSYHGWHYDN* | 327 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr4g3422 | 326 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 1 | 309 | - | - | |
Tpr4g3422 | 326 | CDD | RING-H2_RNF126_like | 201 | 242 | - | - | |
Tpr4g3422 | 326 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 164 | 248 | IPR013083 | - | |
Tpr4g3422 | 326 | SUPERFAMILY | RING/U-box | 181 | 248 | - | - | |
Tpr4g3422 | 326 | MobiDBLite | consensus disorder prediction | 248 | 326 | - | - | |
Tpr4g3422 | 326 | MobiDBLite | consensus disorder prediction | 286 | 326 | - | - | |
Tpr4g3422 | 326 | Pfam | Ring finger domain | 200 | 242 | IPR001841 | - | |
Tpr4g3422 | 326 | Pfam | zinc-ribbon | 6 | 36 | IPR039525 | GO:0061630 | |
Tpr4g3422 | 326 | MobiDBLite | consensus disorder prediction | 250 | 271 | - | - | |
Tpr4g3422 | 326 | SMART | ring_2 | 201 | 241 | IPR001841 | - | |
Tpr4g3422 | 326 | ProSiteProfiles | Zinc finger RING-type profile. | 201 | 242 | IPR001841 | - | |
Tpr4g3422 | 326 | PANTHER | OS03G0351800 PROTEIN | 1 | 309 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr4g3422 | Tpr-Chr4 | 40286714 | 40289527 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr4g3422 | 145 | 246 | C3H Transcription Factor Family | AT5G01980 | 46.154 | 1.22e-26 | 107 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr4g3422 | K11982 | - | gmx:100813674 | 524.242 |