Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3422 ATGTCAAGTGGAGCAACACACTGGTGTTATGAATGCAGTCGGCCAATTGTGCTTGAAGGGAGAGACGCCGTTTGCCCTTACTGTGACGATGGATTTGTACAAGAACTTGATGAGATGAGAGGCATTGCACCTCAAAATACCCTTCCGTCACGCTCGGCAGAGCTTCATCAAATGCCTGATTTATTTGATGCTCTACATGCTTTTGTGGGGAACAGAGGTTCCGAAAACAGGTTTGGGCTTATGGACGCTGTTGATAATTTCATGAGGCATAGAATGGCTGGAATGCACCCAAACTTTGATGTTAGAGGGAGGACCAGTTCTTCTGTCCCGGTTCCTGAACAGAGTTGGGGTGTTTATAGTTCTGGTCCTTTTTTAGTATTTCATGGCCAAGTTCCTGGATTAAACTTGCCTAATGGAAGCCCAAGAGGTGGTCCAAGGCGTGGTGATTTTGGTGACTACTTTATGGGTTCTGGACTTGAAGAGCTTATTGAACAACTCACCATGAATGATCGGCGTGGTCCTCCCCCAGCTGCACGGTCTTCAATTGATGCAATGCCTACTATTAGGATCACACAGGCACATCTTCGCTCCGATTCACATTGTCCAGTTTGTAAAGAAAAATTTGAACTTGGTTCTGAAGCCAGAGAGATGCCATGTGACCATATTTACCATTCCGACTGTATTGTTCCTTGGTTGGTTGAGCATAACTCGTGCCCTGTTTGCCGTGTTGAGCTGCCACCACACGGACAAGTTAGTTCTCGTGCAAGTAGTCGAAGCAACAACAGTGGAAATGGTAGCTCAAGGGGAAGGGAGAGTGACCGTCCAAACAATGGAAGGAGAAATCCATTTTCGTTTCTGTGGCCGTTCCGCTCTTCTAGTTCAAACAATAATCAATATTCTGATACTGGAGGAAGCAGCTCTTCAACCAATGCTGACCAGAATAACGGAACAAGTTATCATGGATGGCACTACGATAACTAA 981 0.4577 MSSGATHWCYECSRPIVLEGRDAVCPYCDDGFVQELDEMRGIAPQNTLPSRSAELHQMPDLFDALHAFVGNRGSENRFGLMDAVDNFMRHRMAGMHPNFDVRGRTSSSVPVPEQSWGVYSSGPFLVFHGQVPGLNLPNGSPRGGPRRGDFGDYFMGSGLEELIEQLTMNDRRGPPPAARSSIDAMPTIRITQAHLRSDSHCPVCKEKFELGSEAREMPCDHIYHSDCIVPWLVEHNSCPVCRVELPPHGQVSSRASSRSNNSGNGSSRGRESDRPNNGRRNPFSFLWPFRSSSSNNNQYSDTGGSSSSTNADQNNGTSYHGWHYDN* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3422 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 309 - -
Tpr4g3422 326 CDD RING-H2_RNF126_like 201 242 - -
Tpr4g3422 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 248 IPR013083 -
Tpr4g3422 326 SUPERFAMILY RING/U-box 181 248 - -
Tpr4g3422 326 MobiDBLite consensus disorder prediction 248 326 - -
Tpr4g3422 326 MobiDBLite consensus disorder prediction 286 326 - -
Tpr4g3422 326 Pfam Ring finger domain 200 242 IPR001841 -
Tpr4g3422 326 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Tpr4g3422 326 MobiDBLite consensus disorder prediction 250 271 - -
Tpr4g3422 326 SMART ring_2 201 241 IPR001841 -
Tpr4g3422 326 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Tpr4g3422 326 PANTHER OS03G0351800 PROTEIN 1 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3422 Tpr-Chr4 40286714 40289527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3422 145 246 C3H Transcription Factor Family AT5G01980 46.154 1.22e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3422 K11982 - gmx:100813674 524.242