Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3418 ATGAGGAAGAAACTAGATACTCGTTTCCCTGCTGCTAGGATTAAGAAAATTATGCAAACCGATGAAGATGTTGGGAAGATTGCAATGGCTGTGCCTGTTCTAGTTTCAAAAGCGCTAGAGCTATTTCTGCAAGATTTGTGCGATAGAACATATGAAATAACACTTAGGAGGGGAGCGAAGACCGTGAATGCTTTTCATTTAAAACAGTGTGTACAAACCTTTAATATCTTTGATTTTCTAAACGATACTGTGAGCAAGGTTCCTGATTTAGGTGGTTCTGTCGCAACTGGTGACGACCAAACTGTCACGAAAAGGAGGAAAGTTGCTGAAGGTGACAATAATGACAGCGACGAGGAGACCAAAAGAAGTAAAATGCCAGAACCTGCACAAACTGGTGGAAGAGGAAGGGGTAGAGGAAGAGGTAGGGGTCGTGGCCGAGGAAGTAAAACCGCAGATCAAGAAACCAGTTTACATATCAAGTTTGAAGATGACTCTGTATTGAAGCAAAATGGCAACCACACTCAAAGTAATGGAAGTCCCGAAATTAAGCAAGAACCCGAAGAAGTTAAGCATTGCTCACCAGTCAGAAAACCGGCTGAAGTATTTGTTCGAAATATCGATTTAAATATGGATCCGGATGACGACATGGATTTTATATCCACACCAACTCCTGTCCCAACTGGTTCATCTTCAAAATCAATATCAGAAGAGAAATCAGAAGAGAAGGTTGATGAATATCCTGGGTGGTCCTTGTCTGATATGGAAAAAATGGCCATTGATCCTATTCAACTTGCTAACTTAAATAAAAGGATTGATGAAGATATGGAAGATTATGATGAAGAAGTGTAG 849 0.4052 MRKKLDTRFPAARIKKIMQTDEDVGKIAMAVPVLVSKALELFLQDLCDRTYEITLRRGAKTVNAFHLKQCVQTFNIFDFLNDTVSKVPDLGGSVATGDDQTVTKRRKVAEGDNNDSDEETKRSKMPEPAQTGGRGRGRGRGRGRGRGSKTADQETSLHIKFEDDSVLKQNGNHTQSNGSPEIKQEPEEVKHCSPVRKPAEVFVRNIDLNMDPDDDMDFISTPTPVPTGSSSKSISEEKSEEKVDEYPGWSLSDMEKMAIDPIQLANLNKRIDEDMEDYDEEV* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3418 282 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Tpr4g3418 282 Gene3D Histone, subunit A 1 72 IPR009072 GO:0046982
Tpr4g3418 282 PANTHER HISTONE SUPERFAMILY PROTEIN 1 281 - -
Tpr4g3418 282 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 281 - -
Tpr4g3418 282 SUPERFAMILY Histone-fold 4 88 IPR009072 GO:0046982
Tpr4g3418 282 MobiDBLite consensus disorder prediction 221 249 - -
Tpr4g3418 282 Coils Coil 264 282 - -
Tpr4g3418 282 MobiDBLite consensus disorder prediction 234 249 - -
Tpr4g3418 282 MobiDBLite consensus disorder prediction 168 182 - -
Tpr4g3418 282 MobiDBLite consensus disorder prediction 100 125 - -
Tpr4g3418 282 MobiDBLite consensus disorder prediction 145 167 - -
Tpr4g3418 282 MobiDBLite consensus disorder prediction 95 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3418 Tpr-Chr4 40256752 40259963 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3418 1 127 CCAAT-HAP5 Transcription Factor Family AT3G12480 69.925 7.45e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Tpr4g3418 CBFD_NFYB_HMF 4.8e-20 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3418 K21752 - gmx:100814800 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3418 4 40256752 40259963 Tpr4g3418 4 40256752 40259963 ECH