Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3409 ATGGCTTCTAGAGCTATTGCTCCGATTGAACATAGAGGTGAGAATATTAAGCCAAAGAATGTTGTTGGGGTAGAAGGAGGAAGAAACAGAAGGGTGCTTCAAGATATTGGAAATCTTGTGATTAATCCAGCAGATCCTGCTGCTAATGCTAATGTGCCTAAGCGCATCACGAGGGCTCAATTAGCTGCTCTTGCTAAAGCCGCCGCAGAGAAGACCAAGAAATCAATCCCTGAACTTGTTAATGGACCTAATGTTGGCAACTTTGTTGCTGCAACAAAAAAAGCGGAACAAGCTCTAAAGCCGGCAGAACCTGAAGTTATTGTCATCAGCTCTGATGATGAATCTGAAGTGAAGGAGAAACAACCTGTTAAAGGAAGAAATATAAGAGAAAGGTCCACAAAGAAAAATGCTAGGGCCTTTAGTTCTGTGCTTTCAGCTAGAAGCAAGGTTGCTGGTGGAATTATGCCAAAGAATTTTGTTGAGAACATTGATGCAACTGATAAGGACAATGAATTGGCTGCAACTGAGTACATTGATGACATCTATGAGTATTACAAGCTCTCTGAAGATGATGTTCGTGTACACGATTACATGGCTTCTCAGCCAGATATAAATGCCAAGATGAGATCCATCCTTGTTGATTGGTTGATTGAAGTGCATAGAAAATTCGAACTTATGCCAGAAACTTTCTATCTGACTCTTAATATCGTTGACCGATTCTTGTCCACTAAGGCTGTACCTAGAAAGGAACTTCAGCTTGTTGGTATCAGCTCAATGCTTATAGCTTCCAAATATGAAGAGATTTGGGCACCAGAGGTTAATGACTTTGTATGCATATCAGACAATGCATATGTTAGAGAACAGGTTCTGATTATGGAGAAAACAATCTTGAGAAAACTCGAATGGTATTTGACAGTTCCTACTCCTTATGTCTTTCTGATTCGGTACATCAAAGCCTCGACTCCCTCTGATAAAGAGATGGAAAACATGGTGAATTTCCTAGCTGAGCTTGCTATGATGCATTACGCTACTGTCTCCACGTATTGCCCTTCGATGATCGCTGCTTCCGCTGTTTATGCCGCAAGATCTACCCTTGAGAGGAGCCCCATTTGGACTGATACTCTAAAGCACTACACAGGCTACTCTGAGGAACAACTAAGGGATTGTGCTAAACTCATGGTTAGCTTTCATTCTGAAGCTCCAGAAAGTAAGCTGAGGGCAATTTACAAGAAGTTCTGTAGCACTGAACGATTGGCTGTTGCTCTTAGGACTCCAGCAAAAAACTTAACTGCAGAATCTTGA 1302 0.4155 MASRAIAPIEHRGENIKPKNVVGVEGGRNRRVLQDIGNLVINPADPAANANVPKRITRAQLAALAKAAAEKTKKSIPELVNGPNVGNFVAATKKAEQALKPAEPEVIVISSDDESEVKEKQPVKGRNIRERSTKKNARAFSSVLSARSKVAGGIMPKNFVENIDATDKDNELAATEYIDDIYEYYKLSEDDVRVHDYMASQPDINAKMRSILVDWLIEVHRKFELMPETFYLTLNIVDRFLSTKAVPRKELQLVGISSMLIASKYEEIWAPEVNDFVCISDNAYVREQVLIMEKTILRKLEWYLTVPTPYVFLIRYIKASTPSDKEMENMVNFLAELAMMHYATVSTYCPSMIAASAVYAARSTLERSPIWTDTLKHYTGYSEEQLRDCAKLMVSFHSEAPESKLRAIYKKFCSTERLAVALRTPAKNLTAES* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3409 433 SUPERFAMILY Cyclin-like 308 428 IPR036915 -
Tpr4g3409 433 SMART cyclin_7 311 395 IPR013763 -
Tpr4g3409 433 SMART cyclin_7 214 298 IPR013763 -
Tpr4g3409 433 PIRSF Cyclin_A_B_D_E 3 433 IPR039361 -
Tpr4g3409 433 CDD CYCLIN 208 297 IPR013763 -
Tpr4g3409 433 ProSitePatterns Cyclins signature. 209 240 IPR006671 -
Tpr4g3409 433 Pfam Cyclin, C-terminal domain 307 422 IPR004367 -
Tpr4g3409 433 Pfam Cyclin, N-terminal domain 180 304 IPR006671 -
Tpr4g3409 433 Gene3D - 180 421 - -
Tpr4g3409 433 SMART Cyclin_C_2 307 426 IPR004367 -
Tpr4g3409 433 SUPERFAMILY Cyclin-like 169 304 IPR036915 -
Tpr4g3409 433 PANTHER CYCLIN-B1-4 22 428 - -
Tpr4g3409 433 CDD CYCLIN 305 394 IPR013763 -
Tpr4g3409 433 Gene3D - 194 305 - -
Tpr4g3409 433 PANTHER CYCLINS 22 428 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3409 Tpr-Chr4 40197080 40200337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3409 1 422 Core Cell Cycle Gene Families AT2G26760 50.235 3.44e-139 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3409 K21777 - gmx:547782 553.903