Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3403 ATGGCTTTCACACTAGAGAGATGTGAAGATAACATGATGTTCACTATGGAATCTCAGAAGTCAGTGCCTGCTCCTTTCTTGACAAAGACATACCAACTTGTTGATGATCCTCTCACTGACCACATTGTATCTTGGAGTGATGATGAAACTACATTTGTTGTTTGGAGACCACCTGAGTTTGCTAGAGATCTTCTTCCCAATTTTTTCAAGCACAACAACTTCTCAAGCTTTGTTAGGCAACTAAATACCTATGGTTTCAAGAAGGTGGTTGCTGATAGATGGGAGTTTGCAAATGAATACTTCAAAAAAGGAGCAAAGCATCTACTATGTGAAATCCACAGAAGAAAAACCCCTCAAAACTATCACCAACAATACTATGAACAACAATCACCACAATTTCATCAACAAGATCATGAAAGTATATGTTGGATTGATTCACCATTACCATCTCCAAAATCAAACACTGATATCTTAACAGCACTCTCTGAAGACAATCAAAGACTAAGGAAAAAGAATTTCATGCTCTTATCAGAACTCACTCACATGAAGAATCTTTACAATGATATCATATATTTCATTCAAAATCATGTGAGTCCTGCTACAACATCCTTTGAACAAAGAAGCAATAATAGTGCTATTTTGAAGCTTGTTGAATTGGATTCATCAGCATCTCAATTAGCAAATGATAATAATGTGGTTAAGGATAGTAATAGTTCTTATGTGAAACTTTTTGGTGTTCCTCTTTGTGGTAAAAAGAGAGTGCATCCAAGTAATCTTGATTAA 783 0.3538 MAFTLERCEDNMMFTMESQKSVPAPFLTKTYQLVDDPLTDHIVSWSDDETTFVVWRPPEFARDLLPNFFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFKKGAKHLLCEIHRRKTPQNYHQQYYEQQSPQFHQQDHESICWIDSPLPSPKSNTDILTALSEDNQRLRKKNFMLLSELTHMKNLYNDIIYFIQNHVSPATTSFEQRSNNSAILKLVELDSSASQLANDNNVVKDSNSSYVKLFGVPLCGKKRVHPSNLD* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3403 260 Gene3D - 18 117 IPR036388 -
Tpr4g3403 260 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr4g3403 260 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Tpr4g3403 260 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr4g3403 260 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr4g3403 260 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr4g3403 260 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4B 10 256 - -
Tpr4g3403 260 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 256 IPR027725 -
Tpr4g3403 260 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr4g3403 260 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3403 Tpr-Chr4 40090573 40092494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3403 10 255 HSF AT1G46264 49.518 5.08e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tpr4g3403 HSF_DNA-bind 3.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3403 K09419 - gmx:100776060 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3403 4 40090573 40092494 Tpr4g3403 4 40090573 40092494 ECH