Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3396 ATGGGCAATTGTTGCTCAGGTGGCACTGATGATCCACAAGACAAGGGAGAAACCAATCAACAAAACAATGCAAATGGAGATTCATCGGCTACAACGCCGCCACCATCATCAAAACCAGCCTCTAAATCATCTAAACCGGCCGCGATGGGTCCTGTTCTCGGAAGACCAATGGAAGATGTAAAAGCTACTTATAGCATGGGGAAGGAACTTGGAAGGGGACAATTTGGTGTAACACATTTATGCACACACAAAGCCACTGGAAAACAATATGCTTGCAAAACAATCGCCAAGAGAAAGCTTGTTAACAAGGAAGATATTGAGGATGTTAGGAGGGAGGTTCAGATTATGCATCATCTAACAGGACAGCCTAATATTGTAGAACTTCTTGGTGCTTATGAAGATAAACAATCTGTTCATTTGGTTATGGAGTTGTGTGCAGGTGGTGAACTATTCGATAGAATCATTGCTAAGGGTCATTATACAGAACGCGCTGCGGCTTCCTTGTTGAGAACCATTGTTCAAATTGTTCATACTTGTCATTCCATGGGTGTTATTCATAGAGATCTTAAGCCTGAAAATTTCCTATTGTTGAACAAGGATGAGAATGCTCCTCTGAAAGCCACCGATTTCGGTTTATCTGTCTTTTACAAGCAAGGAGAAACATTCAAAGATATTGTTGGAAGTGCATATTACATTGCACCTGAGGTGTTGAAGAGGAAATATGGACCAGAAGTAGACATTTGGAGTGTTGGTGTCATGTTATACATTCTTCTATGTGGTGTTCCACCATTTTGGGCAGAATCTGAAAATGGGATATTCAATGCCATCCTAAGAGGCCACGTTGACTTTTCGAGCGATCCATGGCCCTCCATTTCACCTCAAGCAAAAGATCTTGTAAGGAAAATGTTGAATTCAGATCCTAAGCAGAGGCTAACAGCATATGAAGTTTTGAATCATCCTTGGATCAAGGAAGATGGAGAAGCACCAGATACACCTCTTGATAATGCTGTGCTCAATAGGCTCAAACAGTTTAGAGCAATGAATCAATTCAAGAAAGTTGCTCTAAAGGTTATTGCTGGCTGCCTATCAGAGGAAGAAATCATGGGATTGAAGCAGATGTTTAAGGGTATGGACACTGACAACAGTGGAACCATTACAATTGAAGAGCTCAAGCAAGGACTTGCAAAACAAGGAACTAAACTGTCTGAAGCAGAAGTTAAGCAATTAATGGAAGCTGCAGATGCTGATGGTAATGGAATCATAGACTATGACGAGTTCATCACAGCAACAATGGCCATGAACCGAATGAACAGAGAAGAACATGTTTACACTGCCTTCCAATACTTCGATAAAGATAACAGCGGGTACATCACCATTGAAGAACTAGAGCAAGCTCTCCATGAGTATAACATGCATGATGGCAGAGACATCAAGGAAATCATTTCAGAAGTTGATGCAGATAATGATGGTCGGATTAACTATGATGAATTTGTTGCAATGATGGGCAAAGGAAACCCAGAAGTAAATACCAAGAGGCGCAATTCAACCTTGTATTAG 1557 0.4104 MGNCCSGGTDDPQDKGETNQQNNANGDSSATTPPPSSKPASKSSKPAAMGPVLGRPMEDVKATYSMGKELGRGQFGVTHLCTHKATGKQYACKTIAKRKLVNKEDIEDVRREVQIMHHLTGQPNIVELLGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTCHSMGVIHRDLKPENFLLLNKDENAPLKATDFGLSVFYKQGETFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLCGVPPFWAESENGIFNAILRGHVDFSSDPWPSISPQAKDLVRKMLNSDPKQRLTAYEVLNHPWIKEDGEAPDTPLDNAVLNRLKQFRAMNQFKKVALKVIAGCLSEEEIMGLKQMFKGMDTDNSGTITIEELKQGLAKQGTKLSEAEVKQLMEAADADGNGIIDYDEFITATMAMNRMNREEHVYTAFQYFDKDNSGYITIEELEQALHEYNMHDGRDIKEIISEVDADNDGRINYDEFVAMMGKGNPEVNTKRRNSTLY* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3396 518 ProSiteProfiles Protein kinase domain profile. 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3396 518 ProSitePatterns EF-hand calcium-binding domain. 485 497 IPR018247 -
Tpr4g3396 518 ProSitePatterns EF-hand calcium-binding domain. 414 426 IPR018247 -
Tpr4g3396 518 Gene3D Phosphorylase Kinase; domain 1 66 149 - -
Tpr4g3396 518 SMART serkin_6 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3396 518 Coils Coil 387 407 - -
Tpr4g3396 518 Gene3D - 330 505 - -
Tpr4g3396 518 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 18 509 - -
Tpr4g3396 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Tpr4g3396 518 Pfam EF-hand domain pair 440 501 IPR002048 GO:0005509
Tpr4g3396 518 Pfam EF-hand domain pair 370 430 IPR002048 GO:0005509
Tpr4g3396 518 SMART efh_1 476 504 IPR002048 GO:0005509
Tpr4g3396 518 SMART efh_1 369 397 IPR002048 GO:0005509
Tpr4g3396 518 SMART efh_1 405 433 IPR002048 GO:0005509
Tpr4g3396 518 SMART efh_1 441 469 IPR002048 GO:0005509
Tpr4g3396 518 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Tpr4g3396 518 MobiDBLite consensus disorder prediction 12 43 - -
Tpr4g3396 518 Pfam Protein kinase domain 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3396 518 ProSiteProfiles EF-hand calcium-binding domain profile. 476 507 IPR002048 GO:0005509
Tpr4g3396 518 SUPERFAMILY EF-hand 362 501 IPR011992 -
Tpr4g3396 518 ProSitePatterns EF-hand calcium-binding domain. 450 462 IPR018247 -
Tpr4g3396 518 Gene3D Transferase(Phosphotransferase) domain 1 150 329 - -
Tpr4g3396 518 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 509 - -
Tpr4g3396 518 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Tpr4g3396 518 ProSiteProfiles EF-hand calcium-binding domain profile. 437 472 IPR002048 GO:0005509
Tpr4g3396 518 ProSitePatterns Protein kinases ATP-binding region signature. 70 97 IPR017441 GO:0005524
Tpr4g3396 518 ProSiteProfiles EF-hand calcium-binding domain profile. 401 436 IPR002048 GO:0005509
Tpr4g3396 518 SUPERFAMILY Protein kinase-like (PK-like) 48 349 IPR011009 -
Tpr4g3396 518 CDD STKc_CAMK 64 321 - -
Tpr4g3396 518 MobiDBLite consensus disorder prediction 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3396 Tpr-Chr4 40013613 40017223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3396 1 513 EF-hand Containing Proteins AT5G12180 82.319 0.0 900
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tpr4g3396 Pkinase 3.1e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3396 K13412 - gmx:100819061 925.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3396 4 40013613 40017223 Tpr4g3396 4 40013613 40017223 ECH
Tpr3g4345 3 48506365 48509897 Tpr4g3396 4 40013613 40017223 PCT