Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3384 ATGGTGGGAGACAACATAGGATACATGGTCTCTACCAACAACAAGAATTTGATGATGCCAACACCATCGTCGACACAATTGTCTATTAGTAGTCGTATGGGTCTTCCTCAAGAGCCAAGGGAGGAACTTATCACATCCTCCTCCCAAAGGCCTAGAGGTAGAACCTTCGGATCTAAGAACAAGCCAAAACCATCTGTTGTAATCAAGGAGAACACAGAGACCACCATGAAAACGATTCTCATTGAAATCCCTAGTGGAGAAAAAATTGTGGAGGCTTTAATCAATTGGGCTCGAAATCATCAGTCTAGCATAACATTGTTGGAGTGTTCTGGTTTTGTCACTGACGTTACATTTATCGACTCAGTATCTCGTGCCCCTACTTTTTCCACCGAAGGAATGTTCTATATGATATCTCTATCTGGAACATACTTAAATGCCGATTGTGGTAATGTTCCTTCACGATTCATCACTAATCCCGTATTTTCCTCTTTTTCCGTATGTCTTTCTCAAGGTGGTGGAAGGATGTTAAGTGGAATTGTTGGAGGAACAATTAAGGCTGTTGATGGTATTTTGATCACTGCTGGTCTTTTGAAGAAACCCCAATTTCACAGGCTGACCACTATGTATGGAAGAATTATTGAAATTGAAGAGAGTGTTGAATCTGAATCCAACAACAATGTCACTGGAAGCACTTCACTCGCACCGTTAATTATTGACTAG 720 0.4097 MVGDNIGYMVSTNNKNLMMPTPSSTQLSISSRMGLPQEPREELITSSSQRPRGRTFGSKNKPKPSVVIKENTETTMKTILIEIPSGEKIVEALINWARNHQSSITLLECSGFVTDVTFIDSVSRAPTFSTEGMFYMISLSGTYLNADCGNVPSRFITNPVFSSFSVCLSQGGGRMLSGIVGGTIKAVDGILITAGLLKKPQFHRLTTMYGRIIEIEESVESESNNNVTGSTSLAPLIID* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3384 239 MobiDBLite consensus disorder prediction 35 64 - -
Tpr4g3384 239 ProSiteProfiles PPC domain profile profile. 73 221 IPR005175 -
Tpr4g3384 239 MobiDBLite consensus disorder prediction 41 55 - -
Tpr4g3384 239 Pfam Plants and Prokaryotes Conserved (PCC) domain 78 188 IPR005175 -
Tpr4g3384 239 Gene3D - 75 218 - -
Tpr4g3384 239 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 21 228 IPR014476 GO:0003680
Tpr4g3384 239 SUPERFAMILY AF0104/ALDC/Ptd012-like 75 205 - -
Tpr4g3384 239 CDD DUF296 77 184 IPR005175 -
Tpr4g3384 239 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 21 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3384 Tpr-Chr4 39862367 39863086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3384 49 205 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.333 2.25e-23 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3384 - - cam:101509190 204.912