Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3382 ATGGTGTTGTACAACTTCAATGCTGATCAATCTTGGCCTCTGAAACGAAGGATTGCAATAATTCTTGCTCAAAAGCTCTCTGATTCACATCTTACTCCAAAACATCCACACTCCACATTAACAAAAAATATTATATCATTTCAGATATTTTTTTTTACATATTATCAAGTTCATAAATTAAACAAAAAAAAATTCAAGAAAAATAAGAAAAAAAAAATTATAGTTGTGGCTACTACAAGGAGATTGGCATCAGATTCAGGAGCATTTGCTGATTGGGCAGCAACTTCATCATCAACAGTCCGTGCTGCTGCTCCGGAAGATCTTTCTCTCGGTTTCAATGCGGGTCCCACCGCCGCCGGAAACGCCGGACCTTCCACCGGACCCACCACCGGGATATGGCCTGGTGGTGGTGGTGGTGGTTCCAGGTCCGTTAATTACGGACCTGAAATGGGTATGTTTGTTGTAGCACCTTCTCCTTATCATCCTCATCACCACCATCATAGCCACCATGGTAACCACCATGAAGCTATTATTTCCGATCCTCATTCTCTTAACCCCGCTACCGCTCTCGGTGTTGGGGTTATACCTTTACTAACTGCTTCTCCTCTTGATAATGAAAGACAACAACAAGGAATTCAGTTTTGGCATGAACAACAACAACAACATCAACATCATTCAAACTATTTGAAAAAACACCAAGGTTTTCTTGATCATCATATTAATACTAGTCCAACAAATTTAGTTCATCACGGTGGTGGTGGTGGTGGAGGTGGAGGAGGGTTAACTGGTTCAGGAACAAGTAGTGGTGGTGGAACAACTACATGTCAAGATTGTGGAAACCAAGCTAAGAAAGATTGTAGTAATAGAAGATGTAGAACTTGTTGTAAAAGTAGAGGTTTTGATTGCCCTACACATGTTAAGAGTACTTGGGTACCTGCTGCTAGAAGAAGGGAACGTCTTGCTTCGGCGGGGACGACGACGGTGGTTGCTGGTGGTGGTTGTTCTAGTGGTTCAACTTCTGGTGCTAAGAAACCTAGACTTATTGCTTCACAAACTACTTCTCATACTTCTACTTCTAATACTACACCTCCTAGAAGCTTTGACACTACCTCTAGCCATCAAGATGCAGGTTTCAAAGAGTCAATGCCAGGTCAAGTACGTGCACCAGCAATATTCAAGTGTGTTAGAGTAACATCAGTGGATGATGGAAAAGATGAATACGCATATCAAGCAGTAGTGAAAATTGGTGGTCATGTTTTCAAAGGTTTTCTTTATGATCATGGTGTTGAAAATAGAGAAGTTTATCCAAATCTTTCTGAGCTTCATTTAGGAGGAGGTGGTAATAATAATAATGGTGGTGCTAATAGAAATGTAGTTTCATCATCATCACCAATGTTAGATCCTTCTCATGATGTTTATGCAGCAGCTTCAAGTGGTGTTGGAGGATTACTAGGAGGTTCAGCTTATGGTAATCAAATAAATTGA 1485 0.4067 MVLYNFNADQSWPLKRRIAIILAQKLSDSHLTPKHPHSTLTKNIISFQIFFFTYYQVHKLNKKKFKKNKKKKIIVVATTRRLASDSGAFADWAATSSSTVRAAAPEDLSLGFNAGPTAAGNAGPSTGPTTGIWPGGGGGGSRSVNYGPEMGMFVVAPSPYHPHHHHHSHHGNHHEAIISDPHSLNPATALGVGVIPLLTASPLDNERQQQGIQFWHEQQQQHQHHSNYLKKHQGFLDHHINTSPTNLVHHGGGGGGGGGGLTGSGTSSGGGTTTCQDCGNQAKKDCSNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERLASAGTTTVVAGGGCSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSFDTTSSHQDAGFKESMPGQVRAPAIFKCVRVTSVDDGKDEYAYQAVVKIGGHVFKGFLYDHGVENREVYPNLSELHLGGGGNNNNGGANRNVVSSSSPMLDPSHDVYAAASSGVGGLLGGSAYGNQIN* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3382 494 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 149 494 IPR007818 GO:0003700|GO:0006355
Tpr4g3382 494 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 274 316 IPR006510 -
Tpr4g3382 494 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 149 494 - -
Tpr4g3382 494 MobiDBLite consensus disorder prediction 334 378 - -
Tpr4g3382 494 MobiDBLite consensus disorder prediction 334 382 - -
Tpr4g3382 494 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 382 429 IPR006511 -
Tpr4g3382 494 Pfam Domain of unknown function (DUF702) 272 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3382 Tpr-Chr4 39835681 39842669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3382 73 473 C2H2 Transcription Factor Family AT5G12330 48.618 2.50e-98 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Tpr4g3382 DUF702 4.6e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3382 - - gmx:100817745 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3382 4 39835681 39842669 Tpr4g3382 4 39835681 39842669 ECH