Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3376 ATGGAAGAATCAGGTGAGTTGCAACCAGAAGAAAATAAAGCCTCTGGGGAGAAAAATCCGAAAAGAAAGCTCAAAACACCTGCACAGCTTAAGGGCTTGGAGAAATTTTATACTGAGCACAAATATCCGACAGAGGAATTGAAATTAGCGATTGCTGAGGAGTTAGATTTGACAGAAAAGCAAGTATCTGGATGGTTTTGCCACCGAAGATTAAAAGATAAAAGATTGTTGAAAGAAGAAGCAAATGCTGCTGCTAATGGACGACAAGATCGTTCAAGTGGTGTCATCCAGGATCGTGGCAGTGGACTCGGGCAAGATTCATGTGGAAGCAGTAAGCATGGTGATTATAAGTATCTGGATCCTAAAGAGGTTGAGAGCCATGACCTCTACAATCGTGATTTGTCGGTTGCAGATATGACCTATGGACGTAGGAACCATTTTTCTGAAAATGTTAGTGGAATGGACGATACATCATCTGAGAGTAGCTCTTTTTTGCAAGATCGGTTGTATCCTCAAGGCCAAGATCCATATGAGACCGAGCCATCTAGATATCTAGCACATAGTAAAGCTCTTCCGCCCTTAAATCCCAAGGGTACAGTTAACATGGGATATAAACCATCGGGATATTTGAAAGTGAAGGGTGAGATAGAGCATGCTGCTATAACCGCTGTTAAGAAGCAATTAGGAAGGAACTATCGGGAAGATGGTCCACTACTTGGTGTAGAATTTGACCCCCTTCCTCCAGGGGCATTCGAATGCCAAACTGAAGATCCAGTTCATGAACCATACAGTATTGCTGATCCTGCCCTTCTGAATTCTCCAGAAATCTCCACAGTAAAAAGGCGGCCTGGTCTTAGCTCTAGATATGATTCGTATTATACTAAACATAGTTCCCAAGATAATCATATGGAAGGAGACGACTTTGGTTCCTTGCATGATTCTGACGTTCATGATAAACAAGATAAGAAAGCTTTCCATGGTACAAAACACAGACAAGCTTTTCAGAGTAATGCGGCTCGTTTTCCTGGAAGGAACTCTTCATTGGATTTGTATGAAGACTCTACCGGGGAAGCTGCTTATAATATCGCTAAGAATCATAGGAAGGACATCAAGCGCGGTGTTGAGGGGATGAGATCTGATTCTGCTTCTAACCATAGTGATCACTATGAAGAAAACCTTGCAGTTAAACATGCAGACTTTGACTATGATAACATCAAGCCAAAGAATGTGCAAAGGAGTGTTCCTGCAGACTTTCTGCAACATGACTATGATAAAATCAATCCAAAGAATGCGCAAAGGAGTGAACATGTAAAGTCCAAGCCTTCAAATTCAATCCGTAATTCTCGAGGTTCTGTGGATACTGAAGAAAGAGGACTATCTTCTAGAATGGCTAAGGAAGAGATGTTTAAGGGGGACAAGAAGGCAAAGAAGCAATATCGTGACGCAAGCGGAGCAGGGATGCTTTCAAATGAAACTATGGTTACAAAACGACTTAAACCCAATTCATTTCAGCCATACATTATGAAACAATTGCCTGTTGCTGAGATAGAACCAAGGAAAAATCAGAGATCTGCTGCAGAGATGCCGTCTAGCTTTAGCGAGGATGAAACTGCGGATACCAGTTCTTCATTGGATTGA 1638 0.4182 MEESGELQPEENKASGEKNPKRKLKTPAQLKGLEKFYTEHKYPTEELKLAIAEELDLTEKQVSGWFCHRRLKDKRLLKEEANAAANGRQDRSSGVIQDRGSGLGQDSCGSSKHGDYKYLDPKEVESHDLYNRDLSVADMTYGRRNHFSENVSGMDDTSSESSSFLQDRLYPQGQDPYETEPSRYLAHSKALPPLNPKGTVNMGYKPSGYLKVKGEIEHAAITAVKKQLGRNYREDGPLLGVEFDPLPPGAFECQTEDPVHEPYSIADPALLNSPEISTVKRRPGLSSRYDSYYTKHSSQDNHMEGDDFGSLHDSDVHDKQDKKAFHGTKHRQAFQSNAARFPGRNSSLDLYEDSTGEAAYNIAKNHRKDIKRGVEGMRSDSASNHSDHYEENLAVKHADFDYDNIKPKNVQRSVPADFLQHDYDKINPKNAQRSEHVKSKPSNSIRNSRGSVDTEERGLSSRMAKEEMFKGDKKAKKQYRDASGAGMLSNETMVTKRLKPNSFQPYIMKQLPVAEIEPRKNQRSAAEMPSSFSEDETADTSSSLD* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3376 545 MobiDBLite consensus disorder prediction 82 114 - -
Tpr4g3376 545 Pfam Homeodomain 21 75 IPR001356 GO:0003677
Tpr4g3376 545 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Tpr4g3376 545 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 545 - -
Tpr4g3376 545 MobiDBLite consensus disorder prediction 514 545 - -
Tpr4g3376 545 MobiDBLite consensus disorder prediction 86 108 - -
Tpr4g3376 545 Gene3D - 12 85 - -
Tpr4g3376 545 MobiDBLite consensus disorder prediction 7 28 - -
Tpr4g3376 545 CDD homeodomain 21 75 IPR001356 GO:0003677
Tpr4g3376 545 MobiDBLite consensus disorder prediction 1 28 - -
Tpr4g3376 545 MobiDBLite consensus disorder prediction 524 545 - -
Tpr4g3376 545 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 545 - -
Tpr4g3376 545 SUPERFAMILY Homeodomain-like 15 78 IPR009057 -
Tpr4g3376 545 SMART HOX_1 18 80 IPR001356 GO:0003677
Tpr4g3376 545 MobiDBLite consensus disorder prediction 425 442 - -
Tpr4g3376 545 MobiDBLite consensus disorder prediction 450 480 - -
Tpr4g3376 545 MobiDBLite consensus disorder prediction 425 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3376 Tpr-Chr4 39736335 39742121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3376 3 545 Homeobox Transcription Factor Family AT4G03250 40.214 3.32e-87 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Tpr4g3376 Homeodomain 4.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3376 - - gmx:100803515 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3376 4 39736335 39742121 Tpr4g3376 4 39736335 39742121 ECH
Tpr3g4321 3 48230456 48235943 Tpr4g3376 4 39736335 39742121 PCT