Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3369 ATGGCTTTCTTTAGGAACTTCGTAAATGATACAGTCTCGCATGGTGTTATGGAAGATAAAGGCCTAGGACAGGATGCTAATAATATCAATAGATTGGTAGGTAATGAATGTAATGATGCAACTTCTAGCGAGAAAGAATTCGATATGAACTTGGAGGCACAATATGAGAGTGATGGTGGACCAGATGCTGCCTGTAGACCGCAAAATGAGGGAACGGCCGATGATGGAGATGCTATGAGAGAATCCAACTTACAGGCTGCTGGTAGTAAATCATCTACGGTTGGAAAGTGGGGTTCAACATTTTGGAAGGACTGCCAACCAATGTGTCCTCAAAATGGTTCTGAATCTGGGAAGGAATCAAAAAGTGGATCAGACTATAGAAATGCAGGGGGATCCGAAGATAATTCATTGGATGGAGAAACAGGAAGGCTAGACTCGGAAGATGATGATGGACAAAAGGAGGCAGGTAAAAGCCGAAGAAGCCACTCTGATGTTCCTGCAGAAGAGATGTTGTCTGATGAATATTATGAGCAGGATGGGGAAGATCAAAGTGACTCATTGCAGCATTATAATGGGATTCACAAGCCTACTGGACGAAATTCATGGCCTCAACAGATGTCTACTTCCACGAAAAGAACTGTGCATAGGAAATCTAGGATTTCAGATGATGATGGTGATTATGAAGAAGAAGATGAAGTAGATGAAGATGATCCTGATGATGCAGATTTTGAGCCTGCCGCAAGTGGCCATACCTTAACCAAGGATAAAGATTGGGAAGCTATAGGATCGGATGAAAATGATGACAGTGATGAAAGTCTAGATGTCTCTGATGATGACGAATCTTTCTATACTAGAAAACCCAAGGGAAGGCAACAAGGTAAGGTTAGAAAAAGTATAAAATCTACCAGAGATCGCAAAGCAGGTGTTGCATCTAGCAGACAAAGAAGATTCAAATCATCTTTTGAAGATAATGAGTCAACAACAGATGATTCTGACAGTGATAGTGATGATGATTTCAAAAGCACAAGAAAGAGAAGTTTCAATGTCCGCAAGAATAACAGCCGCTTTTCTGCAACCAACAGTTTTTCTACCCACAGCAGTGAGGTCCGCACTTCTACTAGGGCGGTTAGGAAGATATCATATGTTGAAAGTGATGGAAGTGAAGAAGCTGATGAAGGGAAGAAAAAAAAGTCTCAAAAGGAGGAAATTGAAGAGGACGATAGTGACTCTATTGAAAAGGTGCTTTGGCATCAGCTGAAGGGCACAGCTGAAGATGCCCAAAGGAATAATAGATCAACAGAGCCTGCTTTAACGAGTCACCTGTTTGATTCTGAATTTGATTGGAATGAGATTGAATTTTTGATAAAATGGAAGGGGCAATCTCATTTGCACTGTCAATGGAAGTCTTTTGCAGAGCTACAAAATCTCAGTGGCTTCAAGAAGGTTTTGAATTATACGAAGAAAATAATGGAGGACATCAGGTACCGAAAGACAATCTCAAGGGAGGAGATTGAGGTCCATGATGTGAGTAAGGAGATGGATTTAGAAATTATCAGGCAGAATAGTCAGGTGGAAAGAATAATTGCAGACAGGATCAGTAAAGATGATTCTGGTAATGTTATCCCAGAATATCTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGTGACTTGGGAAAAGGACATTGATATCGCTTTTGCTCAACATTCAATTGATGAGTATAAGGCTCGAGAGGCTGCAATGTCAGTTCAAGGAAAGGTGGTGGATTCCCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAATGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGCTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGGAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTGCCGTTGTCTACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATTGTATACGTTGGTACTCGAGCAAGTCGAGAGGTTTGTCAACAGTATGAATTTTATAATGACAAAAAGCCTGGTAAACCAATAAAATTCAATGCACTGTTGACTACATATGAAGTAATTTTGAAAGATAAGGCTGTTCTCTCCAAGATCAAATGGAATTATCTGATGGTAGATGAAGCTCATAGACTAAAAAATAGCGAGGCGCAGTTGTATACATCACTTTTAGAATTTAGCACCAAGAATAAGTTGCTCATCACCGGGACTCCCTTACAAAATAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTCCTTGATCCTAACAAGTTCAAGAGCAAGGATGAGTTTGTTCAAAACTATAAAAATCTGAGTTCTTTCCATGAGAATGAGCTTGCAAATCTTCATATGGAATTGAGGCCACACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCTTTACCCCCCAAAATTGAGCGTATTCTTCGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAACTTTCAAAATTTAAACAAAGGAGTTCGCGGGAATCAGGTTTCTCTTCTAAATATTGTGGTGGAATTGAAAAAGTGTTGCAACCATCCCTTCCTATTTGAAAGTGCTGATCATGGCTATGGTGGGGACTCTGGAGGCAGTGACAACAGTAAACTTGAGAGAATTGTCTTTAGCAGTGGCAAGCTTGTGATACTTGATAAGCTGCTTGTTAGATTGCATGAGACCAAACATCGTGTTCTGATTTTCTCTCAGATGGTCAGGATGTTAGATATACTGGCACAGTATTTGTCACTTCGAGGGTTTCAATTTCAAAGACTTGATGGCAGTACAAAATCTGAGCTGCGACAGCAGGCAATGGAGCATTTCAATGCGTCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGAGCAGGAGGTTTAGGTATCAACCTTGCCACAGCAGACACGGTCATTATATTTGATTCTGACTGGAATCCGCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTTGAAGAAGATATTCTGGAGCGTGCTAAGAAGAAGATGGTTCTGGACCATTTGGTGATTCAAAAACTGAATGCAGAAGGTAGACTGGAGAAAAAAGAAGCCAAAAAAGGAGGAAGTCTTTTTGATAAAAATGAACTGTCTGCAATCTTACGATTTGGAGCAGAAGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAAAGCAAGAAACGACTCTTAAGTATGAATATAGATGAGATTCTTGAAAGAGCTGAGAAGGTTGAAGAGAAGATAGATGAAGAGGAACAAGGCAATGAGTTATTAAGTGCATTTAAGGTTGCCAATTTTTGCAATGATGAAGATGATGCAAGTTTCTGGAGCCGTTGGATAAAGCCTGATGCTGCATTCCAAGCAGAGGAAGCTCTTGCTCCACGTTCTGCAAGAAATATTAAAAGCTATGCAGAGGCTGATCCATCTGAAAGGAGTAATAAAAGAAAAAAGAAGGAACCTGAACCAACTGAGCGAGTTCAGAAGCGCCGCAAAGCAGAGTATTCGGCTCCTGCAGTACCAATGGTTGATGGAGCCTCTGTCCAAGTGAGAAGTTGGTCATATGGGAATTTACCTAAAAGAGATGCACTCCGTTTTTCTCGTGCAGTTATGAAATTCGGGAATGAGAACCAAATCAACTTAATTGCTGCTGACGTTGGTGGTGCAGTTTTGGCAGCTCCACCTGAAGCACAGATTGAACTTTTCAATGCTCTAATTGATGGTTGTTCAGAAGCTGCGGAAATTGAACATTTGGATCTGAAGGGGCCTGTGCTCGACTTTTTTGGTGTCCCAGTGAAAGCAAATGATCTACTTACCCGCGTCCAAGAACTTCAGCTCCTAGCAAAGCGCATTAGCCGGTATGAAGATCCCATTGCACAATTCCGCGTTTTATCATATCTTAAACCTTCAAACTGGTCGAAAGGTTGTGGGTGGAATCAAATTGATGATGCCAGATTGCTTCTTGGAATACATTACCATGGATTTGGTAATTGGGAAATGATTAGATTAGATGAAAGGCTTGGCCTCATGAAAAAAATAGCACCTGTAGAACTCCAAAACCACGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGACCGTGCTAATGCCCTTCTGGAGCAAGAACTCGTTGTTCTTGGGGTAAAAAATGTGAATAGCAGAGTTGCACGTAAGCCTTCCAAGAAAGAGAAAGAACATATGATGAATATCTCACTGTTGCGTGGACAGGAGAAGAAGAAAAAACCAGGTTCTGTTAATGTCCAAATGAGGAAGGATAGGTTTCAGAAACCCCGTAAGGTTGAACCTATTGTAAAAGAGGAAGGTGAAATGTCCGACAATGAAGAAGTATATGAGCAGTTTAAGGAAGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACTTTGAAACGTCTTCACAGATTGCAGACAACTAGTGCTAATCTTCCTAAGGAAAAGGTTCTCTCAAAGATACGCAACTATTTACAACTTCTTGGGCGAAGGATTGATCAAATTGTGTTCGAAAATGAAGCGGAACCCTATAAGCAAGATAGAATGACTGTACGACTGTGGAAATATGTATCCACCTTTTCCCATCTTTCAGGGGAGAGACTTCATCAAATATATTCCAAACTTAAACAGGAACAAAATGATGAGGCCGGGGTTGGTCCCTCTGCTTCATTTAACAGAAATGGAAACCCATTCCATCGCCATATGGAGAGGCAAAGAGGATTAAAAAATATGGCTAACTACCAAGTGACAGAACCTGATAATAATAACTCAGGAAAATCTGAGGCATGGAAACGAAGAAGAAGATCTGAAAGTGATGATCATTTCCAGGGTCAGCCACCACCTCAAAGAATCACCAGTAATGGAATCCGGGTTACTGACCCTAACTCACTTGGGATCCTTGGTGCTGGACCATCTGACAAACGGCTTGTTAGTGAGAAACCTTTTAGGACACAACCTGGTGGTGTTCCTTAA 5196 0.4074 MAFFRNFVNDTVSHGVMEDKGLGQDANNINRLVGNECNDATSSEKEFDMNLEAQYESDGGPDAACRPQNEGTADDGDAMRESNLQAAGSKSSTVGKWGSTFWKDCQPMCPQNGSESGKESKSGSDYRNAGGSEDNSLDGETGRLDSEDDDGQKEAGKSRRSHSDVPAEEMLSDEYYEQDGEDQSDSLQHYNGIHKPTGRNSWPQQMSTSTKRTVHRKSRISDDDGDYEEEDEVDEDDPDDADFEPAASGHTLTKDKDWEAIGSDENDDSDESLDVSDDDESFYTRKPKGRQQGKVRKSIKSTRDRKAGVASSRQRRFKSSFEDNESTTDDSDSDSDDDFKSTRKRSFNVRKNNSRFSATNSFSTHSSEVRTSTRAVRKISYVESDGSEEADEGKKKKSQKEEIEEDDSDSIEKVLWHQLKGTAEDAQRNNRSTEPALTSHLFDSEFDWNEIEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDIRYRKTISREEIEVHDVSKEMDLEIIRQNSQVERIIADRISKDDSGNVIPEYLVKWQGLSYAEVTWEKDIDIAFAQHSIDEYKAREAAMSVQGKVVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYNDKKPGKPIKFNALLTTYEVILKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTSLLEFSTKNKLLITGTPLQNSVEELWALLHFLDPNKFKSKDEFVQNYKNLSSFHENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFQNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGGSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAQYLSLRGFQFQRLDGSTKSELRQQAMEHFNASGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSLFDKNELSAILRFGAEELFKEERNDEESKKRLLSMNIDEILERAEKVEEKIDEEEQGNELLSAFKVANFCNDEDDASFWSRWIKPDAAFQAEEALAPRSARNIKSYAEADPSERSNKRKKKEPEPTERVQKRRKAEYSAPAVPMVDGASVQVRSWSYGNLPKRDALRFSRAVMKFGNENQINLIAADVGGAVLAAPPEAQIELFNALIDGCSEAAEIEHLDLKGPVLDFFGVPVKANDLLTRVQELQLLAKRISRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEMIRLDERLGLMKKIAPVELQNHETFLPRAPNLRDRANALLEQELVVLGVKNVNSRVARKPSKKEKEHMMNISLLRGQEKKKKPGSVNVQMRKDRFQKPRKVEPIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIDQIVFENEAEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQNDEAGVGPSASFNRNGNPFHRHMERQRGLKNMANYQVTEPDNNNSGKSEAWKRRRRSESDDHFQGQPPPQRITSNGIRVTDPNSLGILGAGPSDKRLVSEKPFRTQPGGVP* 1732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3369 1731 MobiDBLite consensus disorder prediction 224 242 - -
Tpr4g3369 1731 MobiDBLite consensus disorder prediction 185 211 - -
Tpr4g3369 1731 SUPERFAMILY Chromo domain-like 405 489 IPR016197 -
Tpr4g3369 1731 ProSiteProfiles Chromo and chromo shadow domain profile. 409 497 IPR000953 -
Tpr4g3369 1731 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 112 1669 - -
Tpr4g3369 1731 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 934 1085 IPR001650 -
Tpr4g3369 1731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 602 835 IPR027417 -
Tpr4g3369 1731 Gene3D - 1341 1444 - -
Tpr4g3369 1731 MobiDBLite consensus disorder prediction 381 409 - -
Tpr4g3369 1731 Gene3D - 524 576 - -
Tpr4g3369 1731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 838 1119 IPR027417 -
Tpr4g3369 1731 CDD CD1_tandem 407 487 - -
Tpr4g3369 1731 SUPERFAMILY Chromo domain-like 501 577 IPR016197 -
Tpr4g3369 1731 MobiDBLite consensus disorder prediction 302 325 - -
Tpr4g3369 1731 MobiDBLite consensus disorder prediction 1683 1701 - -
Tpr4g3369 1731 Pfam SNF2-related domain 633 902 IPR000330 GO:0005524|GO:0140658
Tpr4g3369 1731 Gene3D - 395 521 - -
Tpr4g3369 1731 Gene3D - 605 844 IPR038718 -
Tpr4g3369 1731 MobiDBLite consensus disorder prediction 1653 1731 - -
Tpr4g3369 1731 Pfam Helicase conserved C-terminal domain 931 1044 IPR001650 -
Tpr4g3369 1731 SMART ultradead3 610 806 IPR014001 -
Tpr4g3369 1731 MobiDBLite consensus disorder prediction 108 409 - -
Tpr4g3369 1731 SMART helicmild6 960 1044 IPR001650 -
Tpr4g3369 1731 SMART DUF4208_2 1511 1616 IPR025260 -
Tpr4g3369 1731 MobiDBLite consensus disorder prediction 351 378 - -
Tpr4g3369 1731 Gene3D - 845 1075 IPR027417 -
Tpr4g3369 1731 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 626 798 IPR014001 -
Tpr4g3369 1731 Pfam Chromo (CHRromatin Organisation MOdifier) domain 523 577 IPR023780 -
Tpr4g3369 1731 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 112 1669 - -
Tpr4g3369 1731 MobiDBLite consensus disorder prediction 54 94 - -
Tpr4g3369 1731 SMART chromo_7 520 579 IPR000953 -
Tpr4g3369 1731 SMART chromo_7 408 490 IPR000953 -
Tpr4g3369 1731 MobiDBLite consensus disorder prediction 1666 1682 - -
Tpr4g3369 1731 MobiDBLite consensus disorder prediction 1205 1233 - -
Tpr4g3369 1731 CDD CD2_tandem 520 576 - -
Tpr4g3369 1731 Coils Coil 1074 1094 - -
Tpr4g3369 1731 CDD SF2_C_SNF 920 1055 - -
Tpr4g3369 1731 MobiDBLite consensus disorder prediction 108 135 - -
Tpr4g3369 1731 MobiDBLite consensus disorder prediction 138 169 - -
Tpr4g3369 1731 MobiDBLite consensus disorder prediction 1198 1235 - -
Tpr4g3369 1731 ProSiteProfiles Chromo and chromo shadow domain profile. 522 586 IPR000953 -
Tpr4g3369 1731 Coils Coil 1128 1155 - -
Tpr4g3369 1731 Pfam Domain of unknown function (DUF4208) 1523 1615 IPR025260 -
Tpr4g3369 1731 MobiDBLite consensus disorder prediction 262 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3369 Tpr-Chr4 39626569 39647938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3369 636 1071 RAD5 or RAD16-like Gene Family AT1G02670 26.190 4.45e-37 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr4g3369 SNF2_N 2.9e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3369 K11367 - gmx:100792398 2904.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3369 4 39626569 39647938 Tpr4g3369 4 39626569 39647938 ECH