Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3367 ATGATTACCACAATTCTCCGAAGAGCTTCTTCAACTCTCTCACGCCGCGCCATCCCCGCCGCCGAAGCTCTGCTTTCCACCGCCGCTGCCGGTGAACTCCGACAACTCTCCGTCCTCACAGCAAGGTCTTTCCATTCAAAATCACAACCTTTGTTATTTCGTGCTTCTTTGTCTTCTCGTGCTGGTTATGCTGCTGAAGCTTTTCCATACGAAGAACCCTCGAAAGCAGTGAATAGTGGTGATGATGGTCTTGAGATCAAAAAGCTTGGGATTTCTCAGGATATTGTTTCTGCTTTGGAAAAGAAAGGAATCACTAAGCTTTTCCCTATTCAGAGGGCTGTGATGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGTGCTAGAACAGGAACGGGAAAAACTCTTGCTTTTGGGATACCCATTATGGATAAGATCATTCAGTTTAATGCTAAACATGGGCGAGGAAAGGATCCTCTGGCTTTGGTTTTGGCACCGACTAGAGAACTTGCGAAGCAGGTGGAGAAGGAATTCTATGAAGCGGCACCTAACTTGGATACTATCTGTGTTTATGGGGGTACACCCATTTCTCAACAAATGAGGCAGCTTGATTATGGTGTTGATATAGCGGTGGGCACGCCTGGACGAATTATTGATCTTCTTAGTAGAGGTGCTCTGAATTTGAAGGAAGTTCAGTTTGTTATTCTCGATGAAGCTGATCAGATGCTTCAAGTAGGGTTTCAGGAGGATGTGGAGAAGATCTTAGAGAGATTGCCTGCCAAGAGACAAACTCTTATGTTTTCAGCAACAATGCCATCTTGGATAAAGCAGTTAACACGAAATTACCTAAAAGATCCCCTAACCATTGATCTTGTTGGAGATTCCGATCAGAAGCTAGCAGATGGAATTTCACTGTACTCAATTGCATCTGATTCGTACGTCAAAGCAGGAATTATTGTTCCTCTGATAAAAGAACATGCAAAAGGAGGAAAATGTATTGTTTTCACTCAAACAAAACGTGATGCTGATCGAATATCACATGGCATGTCAAAAAGTATTCCATGTGAGGCCTTGCATGGAGATATATCACAAGCTCAGAGAGAAAGAACTCTTGCTGGATTCAGAAATGGCCATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGGCTTGATATACCTAATGTTGATCTTGTAATTCATTATGAGCTTCCCAATAATTCAGAGATATTTGTTCACCGATCTGGACGAACAGGTCGTGCTGGTAAGAAAGGAACAGCTATTCTAATTTATACAGATGACCAATCCAGGACTCTCAGGACTATTGAGCGTGATGTAGGTTGCAGATTTAACGAGTTACCAAAGATTGCCGTTGATAGTTCATCAATGGGTGCATTTAGCATGGGTGGTGGGCGATTTGGTGGTGGTGGCGGTGGATTTGGTGGTCCAAGGAATGGATTTGGTAATTCAGGCTTTAACCGTGGTCCTGGATCTTTTGGAGGTCCAAGGAATGGATTTGGTGATTCAGGCTTTAACCGTGGTCCTAGCCGTTCTGGGGGCTACGGTAATTCAGGTGAAAGGTTTCCTGGCAACTCATCTAGTGAAAATAGATATGCCGGACCGAGCTCTGGTCGTTTCGGCTCCTTTGGTCCAGGTACTTCAGGAAATAGATCTGGAGGATCACCCAGTGCATTCAAGTTTAGCGGACCAGGTAGTTCAGATCGCCCGGGTAGTTTTGGTGATTTTGTGTCTGGTAAAACTGGCGGATTTAGATTTGGTGATCGCCGTTAG 1794 0.4431 MITTILRRASSTLSRRAIPAAEALLSTAAAGELRQLSVLTARSFHSKSQPLLFRASLSSRAGYAAEAFPYEEPSKAVNSGDDGLEIKKLGISQDIVSALEKKGITKLFPIQRAVMEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGKDPLALVLAPTRELAKQVEKEFYEAAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLSRGALNLKEVQFVILDEADQMLQVGFQEDVEKILERLPAKRQTLMFSATMPSWIKQLTRNYLKDPLTIDLVGDSDQKLADGISLYSIASDSYVKAGIIVPLIKEHAKGGKCIVFTQTKRDADRISHGMSKSIPCEALHGDISQAQRERTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGTAILIYTDDQSRTLRTIERDVGCRFNELPKIAVDSSSMGAFSMGGGRFGGGGGGFGGPRNGFGNSGFNRGPGSFGGPRNGFGDSGFNRGPSRSGGYGNSGERFPGNSSSENRYAGPSSGRFGSFGPGTSGNRSGGSPSAFKFSGPGSSDRPGSFGDFVSGKTGGFRFGDRR* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3367 597 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-LIKE 35 510 - -
Tpr4g3367 597 SMART helicmild6 343 423 IPR001650 -
Tpr4g3367 597 MobiDBLite consensus disorder prediction 526 569 - -
Tpr4g3367 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 444 IPR027417 -
Tpr4g3367 597 CDD DEADc 95 290 - -
Tpr4g3367 597 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 84 112 IPR014014 GO:0003724
Tpr4g3367 597 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 35 510 - -
Tpr4g3367 597 Gene3D - 85 293 IPR027417 -
Tpr4g3367 597 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 115 289 IPR014001 -
Tpr4g3367 597 Pfam Helicase conserved C-terminal domain 318 423 IPR001650 -
Tpr4g3367 597 Gene3D - 312 465 IPR027417 -
Tpr4g3367 597 Pfam DEAD/DEAH box helicase 108 277 IPR011545 GO:0003676|GO:0005524
Tpr4g3367 597 SMART ultradead3 103 306 IPR014001 -
Tpr4g3367 597 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 318 462 IPR001650 -
Tpr4g3367 597 MobiDBLite consensus disorder prediction 478 597 - -
Tpr4g3367 597 CDD SF2_C_DEAD 315 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3367 Tpr-Chr4 39587492 39593977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3367 75 460 Eukaryotic Initiation Factors Gene Family AT3G19760 32.570 1.16e-69 229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4304 3 48049703 48055574 Tpr4g3367 4 39587492 39593977 PCT