Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3350 ATGTCCTGTCTTGGTGGTGGTGCCAGCGGTCAGGTTTCACTATGCCAAAATAAACTCGATAAAGGAATGTATGCGATAAAGAAAATTCCCCTTAAGGACAAAAGCAAGTTTGAAAAAATCTTAAGGGAGGTTACTACACTTGCTTCTTTAAAACATCGACACGTTGTTCGGTATTATCAGGCATGGCTCGAAACCGGATTCCAAGATCATGATGATGGTTCTAGTAGGGATACATGGACTAGAACCTCCAGTAGTGCTATTGGAAGTGAGAATCGTCTCGAGTCAACATATCTTTTTATACAAATGGAGAAATGCGCCAAGACTCTTAAGAAGGAGCTTAAGAAGGAGCGTAAGGTTGATAATGTTCAGAAATGGATTTGGTTTCAACAAATTTTAGAAGCTTTGGAGCACATACACGGGGAAGAAATAATTCATCTTGATTTGAAACCGAATAACATATTCCTAGATGATGCAGATGAAATCAAAGTCGGGGACTTTGGTCTTGCCGAGTTCTTGGAGTCAGATTCAGCCCATCCTGCTGAAACAACTGAAGTTTCCAGTGATGACACTCAAGAAAAGAAACAATCTGTGAAATGGTTATATACAGCTCCTGAGATTGATAATGGATGGGCGAAAATTGATTGCAAGGCTGACATGTACTGCTTGGGATTGATTTTATTTGACCTTTTTCATCCTCCATTTCAGACAGAAATGGAGTGGTTCAATACTTTACTCAGTCTGAAAAAAGAAGGGAAACCTCCAACTGACTGGGCTGCAGAGTTTCCAGAACAAGCATCCTTATTGCAGAAGTTAATTTCGCCAGATCCCTCAAAACGGTTATCTGCCACGGCACTTCTGCAGGATGTATCATTGTTTCCTCCACAAGAGGAGTCTAAATTGTTGGACGGTAAGTTTCTAGGACCTTTATTGTTAATTCTGCTACTTATTGTTATCCACCAAACGAATTCATCATCTTATCTATTAAGCGGGGTCAATTACATGAAATATGTATTATCAGTTCTTTCAGATATCCTGCGGGCAATGCATGATCCAGTGAATAGAAGCATTTACAATCAAATTGTAATGGCTATCTTTGACGAAGAGATGCTAAGAAAGCAGCACAATCATGTTGATGAATTGAGATTAATTGGAGTTAACAGTTCATCGATGCAGATCCGAGATTGTGTTATGGATGTCAACAAAACAATTTTCATGAAATATCATGCTAAACATCTGGAAACATCTCCAATGCGATTAGTGAATGATTCATCTCAATTTGACAGAAGTTTCGTGGCAGATGGCCGTTTTGAGGGATCTGGCGAAATTAACTTCTGCAATAAGGATGCTTGTTCTGGAAACTCTGCAGCCCAGTCAGTTGGAGGTTTCCCTTCTTTTTTCAGACTGAGTAAAACATCTTTATTCAGAAGATATGAGGTGTCATATGTTTACAAAAGAGCAGTTGGGCATTCATCACCAAACCGCTACCTTCAGGGAGATTTTGATATTGTCACCTCGTTTACTTCAGCATCGGCAGAGGCAGAGGTCGTAAAGGTCACGAAGGACATAGTGACTTCTTTTTTCGATGAAGATACATGTGACATTATTTTAAATCATGCGGGACTGTTTCCTGCAATTTGGTCATGGACTGGAATTAAGGTAGAAGACAGACCTAAAGTAGCAGAGCTTCTTTCAATGATGGGTTCTTTGAATCCTTACTCCTCAGAAAGGACACTGATGTGGCAAAAGATTAAGAGGCAACTTTTGCAGGAACTGGGTTTAGTTGAACCTATGGTAAACAACTTGGAGAAGTTGAATTTATCATGTGGATCTCCAGTTTTTGCACTTCACCAACTAAGGGAAATTCTACCACATGATGAGGTTACCTCCAAGGCACTTGATGAATTGTCTAAGCTTGTGGATCGAATTTCATGGACGGAAAATAATGTTCATATAGATCCATTAATGCCAACAACGGAAAGTTATCATAGCGGTTGGTTTTTTCAGGTATACTTAAAGAAGGATATTGAAGGTGACTTGCTAGCTGTTGGTGGTCAATATGACGATTTGCTCCGTCAGTTGCGGAGTAGGGAGGAATATGAAGAAAATCCTCCTGTTGGTGTGGGGACTAGCCTGAAATTAGAGACAGTAATTCAGAATTACTCCAGATGGACAGTGCTGAGGAGGGTGAGCTTGTGA 2196 0.4007 MSCLGGGASGQVSLCQNKLDKGMYAIKKIPLKDKSKFEKILREVTTLASLKHRHVVRYYQAWLETGFQDHDDGSSRDTWTRTSSSAIGSENRLESTYLFIQMEKCAKTLKKELKKERKVDNVQKWIWFQQILEALEHIHGEEIIHLDLKPNNIFLDDADEIKVGDFGLAEFLESDSAHPAETTEVSSDDTQEKKQSVKWLYTAPEIDNGWAKIDCKADMYCLGLILFDLFHPPFQTEMEWFNTLLSLKKEGKPPTDWAAEFPEQASLLQKLISPDPSKRLSATALLQDVSLFPPQEESKLLDGKFLGPLLLILLLIVIHQTNSSSYLLSGVNYMKYVLSVLSDILRAMHDPVNRSIYNQIVMAIFDEEMLRKQHNHVDELRLIGVNSSSMQIRDCVMDVNKTIFMKYHAKHLETSPMRLVNDSSQFDRSFVADGRFEGSGEINFCNKDACSGNSAAQSVGGFPSFFRLSKTSLFRRYEVSYVYKRAVGHSSPNRYLQGDFDIVTSFTSASAEAEVVKVTKDIVTSFFDEDTCDIILNHAGLFPAIWSWTGIKVEDRPKVAELLSMMGSLNPYSSERTLMWQKIKRQLLQELGLVEPMVNNLEKLNLSCGSPVFALHQLREILPHDEVTSKALDELSKLVDRISWTENNVHIDPLMPTTESYHSGWFFQVYLKKDIEGDLLAVGGQYDDLLRQLRSREEYEENPPVGVGTSLKLETVIQNYSRWTVLRRVSL* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3350 731 SUPERFAMILY Class II aaRS and biotin synthetases 469 719 IPR045864 -
Tpr4g3350 731 PANTHER HISTIDYL-TRNA SYNTHETASE 340 721 - -
Tpr4g3350 731 PANTHER HISTIDYL-TRNA SYNTHETASE 3 302 - -
Tpr4g3350 731 ProSiteProfiles Protein kinase domain profile. 1 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3350 731 Gene3D Transferase(Phosphotransferase) domain 1 104 292 - -
Tpr4g3350 731 ProSitePatterns Protein kinases ATP-binding region signature. 4 32 IPR017441 GO:0005524
Tpr4g3350 731 PANTHER EIF-2-ALPHA KINASE GCN2 340 721 - -
Tpr4g3350 731 PANTHER EIF-2-ALPHA KINASE GCN2 3 302 - -
Tpr4g3350 731 Gene3D Bira Bifunctional Protein; Domain 2 385 722 IPR045864 -
Tpr4g3350 731 SMART serkin_6 1 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3350 731 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Tpr4g3350 731 Pfam Protein kinase domain 3 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3350 731 Pfam Histidyl-tRNA synthetase 508 716 IPR041715 -
Tpr4g3350 731 Gene3D Phosphorylase Kinase; domain 1 1 103 - -
Tpr4g3350 731 SUPERFAMILY Protein kinase-like (PK-like) 3 291 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3350 Tpr-Chr4 39437378 39448558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3350 4 292 CBL-interacting serine-threonine protein kinases AT5G58380 27.000 7.25e-17 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Tpr4g3350 Pkinase 8.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3350 K16196 - gmx:100797996 594.349