Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3338 ATGGATAATTCAACTGAAGCATCATCATCATTGAGTTTTGTATCATCTCCTCACTTATCAAATGGTTCAAGTAATAATACTCAGAACAATGAACATGTAGCAAATATTGAAATTGTGAGTTTGAATAAGTTAAGTGGAAGCCTTGAAAAGTTATTATTAAGTGATGTTGATTATGATTATTGTGATGCTGAGATTGTTGTTGAAGAAATTCCGGTTGGTATTCATCGATGTATACTCGCGTCACGGAGTCAGTTTTTTCATGAACTTTTTAAGAAAGGGAAAGATGGAAATGTGGAGGAAGGAAAGGGAAAACCAAGGTATTACATGAAAGATTTGGTGTCTTATGGTAGTATTGGATATGAAGCTTTCATTGTTTTCTTGCATTATTTGTATACTGGAAAGTTAAAGGCTCCACCAACAGAAGTTACAACATGTGTTGATGAAGCTTGTATTCATGATGCGTGTCGTCCGGCTATTAATTATGCTTTGGAACTTATGTATGCTTCTGCCAATTTTAAGATGAAAGAGCTGGTTTTACTTTTTCAGAGGTTTCTCCTAAACTTTGTTGACAAGGCTCTTGTAGAAGATGTCATTCCTATTCTTATGGCTGCACATCACTGCACCCTAGACCAGCTTCTCTCTCCTTGCATTCAGAGAGTAGCAAGGTCTGACATGGATATTATATCTTTGGAAAGAGAACTTCCTTATGAAGTTGTGACTGAAGTCAAATCGTTCCGAGTCCAATCTCTTCCGGAATCCTCTCCCGATGCAATGGAAGTGGAACCTGTGAATGTGAATGATAAGAGTGTCAGGAAAATCCTTAAAGCATTGGATTCTGATGATGTTGAGTTACTGAAGCTTCTTTTAGAGGAATCTAGTGTGACTCTCGATGATGCTTGTGCACTACACTATGCCTGTGCACATTGTGATTCTAAGGTTGTTCAAGAAGTTCTTACTCTAGGATTAGCTGATATTCTCCTTAAGAATCCGCGCGGATACACAGTTCTTCATGTCGCAGCAAGACGAAAGGATCCATCTATTTTGGTTGCACTGCTGAAGAAAGGTGCCTGTGCATCAGAAACAACTCTTGATGGACAAACTGCTCTTTCGATTTGTCAGAGATTGACGAGGCGAAAGGATTATCATTTGAAAACAGTGCAATGGAAGGAGTCTCACAAGGATAGGCTTTGTGTCGATGTACTTGAAAGAGAAATGAGAAGAAATTCTATGTCAGTGAACATGGAAGTTTTGTCACAGTTAACTGCTGATGACTTGCACATGAGACTGGATTACCTTGAAAATAGAGTTGCATTTGCTAGGTTGATCTTTCCTGCTGAGGCTAGGGTAGCCATAGAGAATGCTGAGGCAGATTCAACGTCACTGTATGCAACTTCATCACTTTTAAAAGGCAACATAAAAGAAGTAGATCTAAACGAAACTCCTTCTGTTAGAACAAGAAAACTTCAATTAAGATTACAGTCCCTTGTAAAAACAGTTGAGAATGGCAGGCGGTTTTTTCCGCATTGTTCGGAGGTGCTTGATAAATTTCTGGAGGACGACATGCCGGATGTTTTCATCCTAGAGAAAGGCACTGAAGAAGAGCAGAGAACAAAGAAAGCACGGTTCATGGAACTTAAAGACGAGGTGCAGAAGGCCTTTCACAAAGACATGGCTGAAAATAACCATTCGGGTTTTCATTCTTCGTTGTCTTCTACATCATCCACAACTCGTCGGGAAAGTCTTAACCACAAAGTAAGGAGAAAATGA 1767 0.3928 MDNSTEASSSLSFVSSPHLSNGSSNNTQNNEHVANIEIVSLNKLSGSLEKLLLSDVDYDYCDAEIVVEEIPVGIHRCILASRSQFFHELFKKGKDGNVEEGKGKPRYYMKDLVSYGSIGYEAFIVFLHYLYTGKLKAPPTEVTTCVDEACIHDACRPAINYALELMYASANFKMKELVLLFQRFLLNFVDKALVEDVIPILMAAHHCTLDQLLSPCIQRVARSDMDIISLERELPYEVVTEVKSFRVQSLPESSPDAMEVEPVNVNDKSVRKILKALDSDDVELLKLLLEESSVTLDDACALHYACAHCDSKVVQEVLTLGLADILLKNPRGYTVLHVAARRKDPSILVALLKKGACASETTLDGQTALSICQRLTRRKDYHLKTVQWKESHKDRLCVDVLEREMRRNSMSVNMEVLSQLTADDLHMRLDYLENRVAFARLIFPAEARVAIENAEADSTSLYATSSLLKGNIKEVDLNETPSVRTRKLQLRLQSLVKTVENGRRFFPHCSEVLDKFLEDDMPDVFILEKGTEEEQRTKKARFMELKDEVQKAFHKDMAENNHSGFHSSLSSTSSTTRRESLNHKVRRK* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3338 588 ProSiteProfiles Ankyrin repeat region circular profile. 331 356 - -
Tpr4g3338 588 SUPERFAMILY Ankyrin repeat 273 375 IPR036770 -
Tpr4g3338 588 PANTHER REGULATORY PROTEIN NPR3 1 586 IPR044292 GO:0009862|GO:2000022|GO:2000031
Tpr4g3338 588 ProSiteProfiles Ankyrin repeat profile. 331 356 IPR002110 GO:0005515
Tpr4g3338 588 Pfam NPR1/NIM1 like defence protein C terminal 373 572 IPR021094 -
Tpr4g3338 588 PANTHER REGULATORY PROTEIN, PUTATIVE-RELATED 1 586 - -
Tpr4g3338 588 SMART ANK_2a 297 327 IPR002110 GO:0005515
Tpr4g3338 588 SMART ANK_2a 331 360 IPR002110 GO:0005515
Tpr4g3338 588 CDD BTB_POZ_NPR_plant 42 189 - -
Tpr4g3338 588 SMART BTB_4 61 189 IPR000210 GO:0005515
Tpr4g3338 588 MobiDBLite consensus disorder prediction 554 588 - -
Tpr4g3338 588 Gene3D - 264 466 IPR036770 -
Tpr4g3338 588 Pfam BTB/POZ domain 59 142 IPR000210 GO:0005515
Tpr4g3338 588 ProSiteProfiles BTB domain profile. 61 139 IPR000210 GO:0005515
Tpr4g3338 588 SUPERFAMILY POZ domain 54 187 IPR011333 -
Tpr4g3338 588 MobiDBLite consensus disorder prediction 1 27 - -
Tpr4g3338 588 Pfam Ankyrin repeats (3 copies) 279 356 IPR002110 GO:0005515
Tpr4g3338 588 MobiDBLite consensus disorder prediction 562 578 - -
Tpr4g3338 588 Gene3D Potassium Channel Kv1.1; Chain A 23 221 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3338 Tpr-Chr4 39377477 39380909 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Tpr4g3338 NPR1_like_C 3.5e-81 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3338 K14508 - gmx:100814739 851.277