Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3330 ATGGCAAATTATGAAGAACAGTCACATGGTTTCACTTATGATGTTTTCCTCAGTTTTAGAGGGGAAGACACGCGACACGGTTTTATTGGATATCTTCGCGATGCATTGCGGCAGAGAGGAATCAATGCTTTCTTTGATGATAAGAATCTGAGAATAGGGGAAGATATTTCACCTTCCCTTTCAAAAGCCATTGAAGAATCTAAGATCTCAGTTATTGTTTTTTCTGAGAATTATGCATCTTCCAGGTGGTGTCTTGGCGAACTCGTGAAGATCGTGGAATGTACAAAAAGTAACAACAAACAACTTGCTTTCCCAATTTTTTACCATGTTGATCCATCCGATGTACGACATCAAAGAAATAGCTATGGAGAAGCCATGGTTGCTTATCAGATTAGGTTTGGAAAAGACTCAGAAAAAATACAAGCATGGACAGCAGCATTGTCTAAAGTCGCAGACTTGAAAGGTCACCATATCGACATTGGGCACGAAATCAATCATGTTAAAGAGATTGCTGAAAAGGTTCACGCTAATATAGCTCCTAAACCTTTACTTGTTGGTGAGAAACCAGTTGGACTTGATGAACACATAGAAGAGGCGAAGTCACTTCTAAACTTGAAGCCAAATGACGATACTGTATGCATGTTGGGCATAATTGGACTTGGTGGAATAGGGAAAACAGAACTTGCAAAAGCATTGTATAACAAGAATGTGCACCGATTTGAAGCTGGAAGTTTTCTTGCCAATGTTAGTGAAAAATCGAACAAAATCAATGGGCAAGAAGATCTACAGAAGACCCTTTTATCAGAGATGTTTGAGCAGCCAGAAACGGAGTGGGGAAGTACAAGTAAAGGAATCTATGAAATAAAACACAAGCTTGGAAGGAAAAAGGTTCTTTTGGTACTTGACGATGTTGATGAGATGAAACAATTTGAAAACTTAGCAGGAGGAAGTGATTGGTTTGGTCCAGGTAGTAGGATCATTATAACCACAAGGGACAAAGGTTTACTCATGGGTACTTATCCGATAGAAGTTAAGACTTATGAAATGACTGAACTTAATGAGCAACATTCTCTTGAGTTGTTTTGTAGAAATGCCTTTGGACAAAGCAATCCTAAAACAGGATATGAAGCCGTGTCTTCTCGTGCCGTTGGTTATGCAAAAGGTCTTCCACTGGCTTTAAAAGTTATAGGCTCCAATTTGGCTACTAGAAAAAGTTTAAAAGCTTGGGAGTCTGCATTGAAAGATTATGAGAGGATTCCGCGTAAAGGGATTCAAGATGTGCTTAAAGTAAGCTATGATGTGTTGGAGCCTTCTGCACAAAGTGTTTTCCTCGATATAGCTTGCTTCTTCAAAGGGGAAAGCATAGAATATGTTGAAGAAATACTTGATGAATTCAGCGCAGCGTCAAATATTGAAGAGCTTGTTAATAAATCTCTCTTGAATGTTGATAATGGATACTTGAATATGCATGACCTAATACAGGATATGGGTAGAGAGATTGTTAGGCAAGAGGCACCAAATAATCCTGCAAAACGTAGTAGATTATGGTTTCATCAAGATGTCATTGATGTATTATCAGCCAACGATTCAGGGAGTGATGCAATTCAAGGGATAATGCTTGAACCTCTTGAATATACAACAGACGTATATTTGAATGATTCCGCTTTTGAGAAGATGAATCGTCTCAGAATTCTCATTGTTCGAAATACAACTTTTTCATCAGAGCCTAAACATCTTCCAAATCATTTAAGGGTACTTGACTGGAAGGAATACCCTTCAAAGACTTTCCCACCAAAATTTTATCCGACAAAAGTCATCATCTTAAATTTGTCTACTAGTCAACTTACAATGGAAGAGCCATTTAAGCAATTTTCATATCTGACTGTCATGAATTTCTCATTTACTTCATCTATCACAACAATGCCGGATGTGTCCAAAGTTGAAAATTTGAGAGAATTGCAATTTGATTTTTGTGAGAACTTAACTACGGTTCATGAATCCATTGGATTTCTCAAACATCTTGTCCACTTAAGTGCTTCGGGATGCACCAAACTTGAAAATTTTCTGCCAAGAATATTTTTACCATCTCTAGAAGTCCTTGTCCTTGATTTTTGTACCAACCTTGAACACTTCCCAGATATAGTGAACAAGATGAATAAACCATTGAAGATTCATATGCAGAGGACCTCTATTAAGAAACTGCCAAATTCCATTGGTAATCTTATTGGACTTGTTTCGATAGAGATGCAACATAGCAAGAATCTTGAATATCTACCAAGTAGCTTATTCACGCTACCAAATGTTGTTGCTTTTAAATTTGGAGGATGTTCTAAACTTAGTAAATCTTTCAGAAGATTGCTACCTGATAGCCCTTCAGAATCCAATGAACGTTCAACATTAAAAATAATTCATCTTGAAAACAGTGGCTTGTCAGATGAAGATATTCACACAATTCTCATATGTTTTCCAAAATTAGAAGAATTGATTGCATCAGGTAACAATTTTGTCTCTCTCCCATCGTGCATTAAAGAGTCTGTTCACTTGACAAATCTTGATGTTAGTGATTGCAAAAAACTTCAAAAAATTCCCGAATGCACCAACTTGAGAATTCTGGATGTCCGTAATTGTTGGAGTCTTGCACACATTTCAGAGTTGCCATGCACTATTAAAAAATTAGATGCAAGATATTCCTGCATCTTTTCTTCGAAGACATCAGACATGCTATGGGATCAGGTGAAGAAAGAGAGGCATGGATTAGAAATTGTGATGCCTAGAATTAAGGTTCCAAAATGGTTTGATTATAGATACAAAGGAGGAATTCCGTGTTTATGGGTTCGTGGGAAGTTTCCCATTAATGTTGCTTTATCATTGGTGTTCCAAGCTGTGGATGGGGAACAAAGTATAAATCAGGATCTTGTTCAACTTCATTTGGTTATCAACGGTCAATGTGTACTTCGCAAAGGCTATTACAACTTCAGAATTGGACCTGATCATGTTTTAGTTTGTGATCTACGACTCTTATACAATGACGAAGAGTGGCTAAGTCTTGATACATTACTTCTTAAGCATGAATGGAATCAAGTGCAAATTTCATATGAAGCCTTGTCCAGTTTCGTGACACTAAGTGAATGGGGAGTTTTTGTGTACAAACAAGGAGGAACTGTTAACTTGGAAGAACATGTTCAATTCATGTGTCCTGACCCAACAAGGTACTCAAACATAGCTAACATAATAGTCCCTCCAAAAAATCCTATCGATGATCAAATTATGATGATGGAGGAGTTAGCTTTTGATGAAATACCTGAACCTGAAGACGAAATTAAAGAAAAACTTCACAATAAAGTGACAATGTTTCAAACTATGATGAAATTGCTATTTTTGCCATTAAAATTATTTTTGATAAGAGTTGGCATCATCTCTGGCTAA 3426 0.3701 MANYEEQSHGFTYDVFLSFRGEDTRHGFIGYLRDALRQRGINAFFDDKNLRIGEDISPSLSKAIEESKISVIVFSENYASSRWCLGELVKIVECTKSNNKQLAFPIFYHVDPSDVRHQRNSYGEAMVAYQIRFGKDSEKIQAWTAALSKVADLKGHHIDIGHEINHVKEIAEKVHANIAPKPLLVGEKPVGLDEHIEEAKSLLNLKPNDDTVCMLGIIGLGGIGKTELAKALYNKNVHRFEAGSFLANVSEKSNKINGQEDLQKTLLSEMFEQPETEWGSTSKGIYEIKHKLGRKKVLLVLDDVDEMKQFENLAGGSDWFGPGSRIIITTRDKGLLMGTYPIEVKTYEMTELNEQHSLELFCRNAFGQSNPKTGYEAVSSRAVGYAKGLPLALKVIGSNLATRKSLKAWESALKDYERIPRKGIQDVLKVSYDVLEPSAQSVFLDIACFFKGESIEYVEEILDEFSAASNIEELVNKSLLNVDNGYLNMHDLIQDMGREIVRQEAPNNPAKRSRLWFHQDVIDVLSANDSGSDAIQGIMLEPLEYTTDVYLNDSAFEKMNRLRILIVRNTTFSSEPKHLPNHLRVLDWKEYPSKTFPPKFYPTKVIILNLSTSQLTMEEPFKQFSYLTVMNFSFTSSITTMPDVSKVENLRELQFDFCENLTTVHESIGFLKHLVHLSASGCTKLENFLPRIFLPSLEVLVLDFCTNLEHFPDIVNKMNKPLKIHMQRTSIKKLPNSIGNLIGLVSIEMQHSKNLEYLPSSLFTLPNVVAFKFGGCSKLSKSFRRLLPDSPSESNERSTLKIIHLENSGLSDEDIHTILICFPKLEELIASGNNFVSLPSCIKESVHLTNLDVSDCKKLQKIPECTNLRILDVRNCWSLAHISELPCTIKKLDARYSCIFSSKTSDMLWDQVKKERHGLEIVMPRIKVPKWFDYRYKGGIPCLWVRGKFPINVALSLVFQAVDGEQSINQDLVQLHLVINGQCVLRKGYYNFRIGPDHVLVCDLRLLYNDEEWLSLDTLLLKHEWNQVQISYEALSSFVTLSEWGVFVYKQGGTVNLEEHVQFMCPDPTRYSNIANIIVPPKNPIDDQIMMMEELAFDEIPEPEDEIKEKLHNKVTMFQTMMKLLFLPLKLFLIRVGIISG* 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3330 1141 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 18 1050 - -
Tpr4g3330 1141 Pfam TIR domain 13 174 IPR000157 GO:0007165
Tpr4g3330 1141 Pfam NB-ARC domain 195 436 IPR002182 GO:0043531
Tpr4g3330 1141 Gene3D - 12 176 IPR035897 -
Tpr4g3330 1141 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 155 IPR035897 -
Tpr4g3330 1141 Gene3D Ribonuclease Inhibitor 543 723 IPR032675 -
Tpr4g3330 1141 Gene3D Ribonuclease Inhibitor 724 916 IPR032675 -
Tpr4g3330 1141 Gene3D - 351 436 IPR042197 -
Tpr4g3330 1141 PRINTS Disease resistance protein signature 214 229 - -
Tpr4g3330 1141 PRINTS Disease resistance protein signature 291 305 - -
Tpr4g3330 1141 PRINTS Disease resistance protein signature 386 400 - -
Tpr4g3330 1141 PRINTS Disease resistance protein signature 692 708 - -
Tpr4g3330 1141 Gene3D - 177 340 IPR027417 -
Tpr4g3330 1141 SMART till_3 12 153 IPR000157 GO:0007165
Tpr4g3330 1141 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 446 IPR027417 -
Tpr4g3330 1141 SUPERFAMILY L domain-like 489 886 - -
Tpr4g3330 1141 ProSiteProfiles TIR domain profile. 11 151 IPR000157 GO:0007165
Tpr4g3330 1141 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 1050 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3330 Tpr-Chr4 39285066 39291003 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3330 4 790 WRKY Transcription Factor Family AT4G12020 29.975 1.77e-81 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3330 - - mtr:MTR_5g090940 1498.8