LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr4g3328	ATGTCTATGGCAAATTATGAAGAACAGTCGGATCGTTTCACCTATGATGTTTTCCTCAGTTTTAGAGGAGAAGACACACGGGAAAATATTGTTGGATATCTTCTTGATGCATTTCAGAAGAGGGGAATCAAAGTTTTCTATGATGATAAAAGTCTGAAAATAGGGGAAGAATTGTCACCTGCATTTTATAAAGCCATAGAAGAATCTAATATCTCTGTTATTGTTTTATCTGAGGATTATGCATCTTCTAAGTGGTGCCTTAATGAACTCGCGAAGATCATGGAATGTACCAAAAGAAACAAGGAACAAATTGCTTTTCCAATATTTTACCATGTTGATCCATCGGATGTACGAAATCAAAGAAAGAGCTATGGAGAAGCCATGGTTGCTCATGAGAAGAGGTTTGGAAAAGATTCAGAAAAAATAAAAGCATGGAGAGCATCATTGTCTGAAGTGGCAGACTTGAAAGGTCACCACATCCACACTGGACACGAAATCGATCATGTTAAAGAGATTGCCGAAAAGGTCCATGCTAATATAGCTCCTAAACCTTTACTTGTTGGTGAGAGTCCAGTTGGACTTGATCAACACAAAGAAGATGCAAAGTCACTTCTAGACTTGAAGCCAAATGACGGAACTGTATGCACGTTGGGCATAATTGGACTTGGCGGAATAGGGAAAACTGAACTTGCCAAAGCATTGTATAACAAGATTGTGCACCAATTTGAAGCTGCAAGTTTTCTTGCCAATGTTAGAGAGAAATCGAACAAAATCAATGGCCTAGAAGATTTGCAGAAGACCCTTTTATCAGAGATGTTTCAGCAGCCAAAAAGCGAGTTGGGAAGTACAAGTAAAGGAATCTATGAAATAAAACACAAGCTTGAAAAGAAAAAGGTTCTTTTGGTACTTGATGATGTTGATGAGATGAAACAATTAGAAAATTTGGCAGGAGGAAGTGATTGGTATGGTCCAGGTAGTAGGATCATTATAACAACAAGGGACAAAGGTTTGCTCATGGGTACTCATCAAATAGAAGTTAAGACTTATGAAATGACTGAACTTAATAATCAACATTCTCTTCAGTTGTTTTGTAGAAATGCCTTTGGAAAAAACAATCCAAAAACAGGATATGAAGCTATGTCTTATCGCGCGATTGGTTATGCAAAAGGTCTTCCATTGGCTTTAAAAGTTATAGGCTGCAATTTGGCTACTAGAAAAAGTTTAAAAGCTTGGGAGGATGCATTGAAAGATTATGAGAGGATTCCCCGTAAAGGGATTCAAGATGTGCTTAAAGTAAGCTATGATGTGTTGGAGCCTTCTGCACAAAGTGTTTTCCTCGATATAGCTTGCTTCTTCAAAGGGGAAAACATAGAATATGTTGAAGAAGTACTTGTTGAATTCAGTGCAACATCAAATATTGAAGAGCTTGTTAATAAATCTCTCTTGAATGTTGATGATGGATACTTGAATATGCATGACCTAATACAAGATATGGGTAGAGAGATTGTTAGGCAAGAGGCACCAAATAATCCTGCAAAACGTAGTAGATTATGGTTTCATCAAGATATCATTGATGTATTATCGGCCAACGATTCAGGGAGTGACACAATTCAAGGGATAATGGTTGGTCCTTCTATTTATATGACAGAAGTATATTGGAATGATTGTGCTTTTGAGAAGATGAACTGTCTCAGAATTCTCATTGTTCGAAATATAACTTTTTCATTAAAGCCTAAATATCTACCAAATCATTTAAGGCTACTTCACTGGGAGGCATACCCTTCAAAGACTCTCCCACCAAAATTTTATCCGAGGAATATCATCATCTTCAATTTGCCTAATAGTCAACTTACATTGACAGAGCCATTTAAGCAATTTTCAAATCTGACTGTCATGAATTTCTCAAATAATAAATATATCACAACAATCCCTGATGTGACCAAAGTTGAAAATTTGAGAGAATTACGACTTGATTCTTGTGATAACTTAACTACGGTTCATGAATCCATCGGATTTCTCAAACATCTTGTCCACTTAACTGCTTCGAGATGCAGCAAACTTGAAAACTTTCTGCAAAGAATGTTTTTACCATCTCTAAAAGTCCTTGACCTTGATTCGTGTGTAAAACTTGAACACTTCCCAGATATAGTGGCCGAGATGAATGAACCATTGGAGATTCATATGCGTTATACCTCTATTAAGAAGCTACCAAATTCCATTGGTAATCTTATTGGACTTGTTTTAATAGACATGCAACGATGTTGCAAACTCGAATATCTACCAGATAGCTTATTCAGTTTACCAAATGTTGTTGATTTTGACTTTGGAGGTTGTCCTAAACTTGGTGGATCGTTCAGAAGATTTCTACCTGATAGCCCTTCAGAAGGCAATGGACGTTCAAAATTAAAAACAATGCAATTTGGAGAAAGTGGTTTGTTAGATGAAGATATTGAGACAATTCTTAGTCCAAAATTAGAAAGATTGTTTTTATCATGCAATAATTTAGTCTCTCTCCCAACGTGCATTAAAGAGTGTAATCACTTGACATTTCTTGATGTCAGAAGTTGCCAAAAGCTTGAAAAAATTCCCGAATGCACCAACTTGAGAATGTTGGATGTCTCGGGTTGTCCGAGTCTTACACACATTTCAGAGTTACCATGCACTATTCAACAAATAAATGCAAACTATTGCTTCAACTTTTCTTTGGAGACATCAGACATGCTATGGGATCAGGTAAGAAAAGGGAGGACTGAATTAGAACATATTATGATGCCTGCAGTCAAGGTTCCAAAATGGTTTGATTATAGATGCAAAGGAGGATTTCCGGTTTTTTGGGTTCGTGGGAAGTTTCCCAAAATTGTTTTAGCATTTGTGTTCCAAGATGCAGTGAAGCAATCACCATATCCTGTTAATTTGTTTGTTGAATTATTCCCATTAATCAACGATAAACATGTCCCTAACAAAACCGTTTGCAAGTTCGGGATTGAACGGAATCATGTTGTAGTTTGTGATCTACAAGTCTTATTCTGTGGCACAAGCATTGATGCATTACTTCTTAAGAATGAATGGAATCAAGTGCATATTTCATATGAAGTCAATGACAGGACATATGAATTGGATAAAACTGAGGACTATTACTTGACAGTAAGTGAATGGGGAGTTTTTGTGGACAAACAAGGAATTGTTAACTTGGAAGAACATGTTCAATTCACGTGTCCTACTACGAAGGATCCAATTATGACGATAGATGATTTCAAACACGACGATTCCAATGAAAACCCTGCTGTTAATGAAAACCGTGTTGATAAAACAATTGGCATAGAGGATATTCCTAGTCCTACTGCTCCAGAAGTTGATGAAACTGAGCAGTACACTCATATGTTGGAGGAAAATGAGAATTCCAATGATGCTGCTGTTAATGAAAATGAAAATCATTATGATAAAACAATTGGCACAGAATATATCCCTAGTCCTTACCCCTCTGGTTTTTTCTGGAGGCTGTTGTATACTTGTTTTTGTAAGTGTTTCTCTTAG	3534	0.3662	MSMANYEEQSDRFTYDVFLSFRGEDTRENIVGYLLDAFQKRGIKVFYDDKSLKIGEELSPAFYKAIEESNISVIVLSEDYASSKWCLNELAKIMECTKRNKEQIAFPIFYHVDPSDVRNQRKSYGEAMVAHEKRFGKDSEKIKAWRASLSEVADLKGHHIHTGHEIDHVKEIAEKVHANIAPKPLLVGESPVGLDQHKEDAKSLLDLKPNDGTVCTLGIIGLGGIGKTELAKALYNKIVHQFEAASFLANVREKSNKINGLEDLQKTLLSEMFQQPKSELGSTSKGIYEIKHKLEKKKVLLVLDDVDEMKQLENLAGGSDWYGPGSRIIITTRDKGLLMGTHQIEVKTYEMTELNNQHSLQLFCRNAFGKNNPKTGYEAMSYRAIGYAKGLPLALKVIGCNLATRKSLKAWEDALKDYERIPRKGIQDVLKVSYDVLEPSAQSVFLDIACFFKGENIEYVEEVLVEFSATSNIEELVNKSLLNVDDGYLNMHDLIQDMGREIVRQEAPNNPAKRSRLWFHQDIIDVLSANDSGSDTIQGIMVGPSIYMTEVYWNDCAFEKMNCLRILIVRNITFSLKPKYLPNHLRLLHWEAYPSKTLPPKFYPRNIIIFNLPNSQLTLTEPFKQFSNLTVMNFSNNKYITTIPDVTKVENLRELRLDSCDNLTTVHESIGFLKHLVHLTASRCSKLENFLQRMFLPSLKVLDLDSCVKLEHFPDIVAEMNEPLEIHMRYTSIKKLPNSIGNLIGLVLIDMQRCCKLEYLPDSLFSLPNVVDFDFGGCPKLGGSFRRFLPDSPSEGNGRSKLKTMQFGESGLLDEDIETILSPKLERLFLSCNNLVSLPTCIKECNHLTFLDVRSCQKLEKIPECTNLRMLDVSGCPSLTHISELPCTIQQINANYCFNFSLETSDMLWDQVRKGRTELEHIMMPAVKVPKWFDYRCKGGFPVFWVRGKFPKIVLAFVFQDAVKQSPYPVNLFVELFPLINDKHVPNKTVCKFGIERNHVVVCDLQVLFCGTSIDALLLKNEWNQVHISYEVNDRTYELDKTEDYYLTVSEWGVFVDKQGIVNLEEHVQFTCPTTKDPIMTIDDFKHDDSNENPAVNENRVDKTIGIEDIPSPTAPEVDETEQYTHMLEENENSNDAAVNENENHYDKTIGTEYIPSPYPSGFFWRLLYTCFCKCFS*	1178

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr4g3328	1177	Gene3D	-	353	438	IPR042197	-
	Tpr4g3328	1177	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	34	1029	IPR044974	GO:0006952
	Tpr4g3328	1177	Gene3D	-	179	346	IPR027417	-
	Tpr4g3328	1177	PRINTS	Disease resistance protein signature	216	231	-	-
	Tpr4g3328	1177	PRINTS	Disease resistance protein signature	293	307	-	-
	Tpr4g3328	1177	PRINTS	Disease resistance protein signature	388	402	-	-
	Tpr4g3328	1177	PRINTS	Disease resistance protein signature	694	710	-	-
	Tpr4g3328	1177	SUPERFAMILY	Toll/Interleukin receptor TIR domain	7	157	IPR035897	-
	Tpr4g3328	1177	Gene3D	-	14	178	IPR035897	-
	Tpr4g3328	1177	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	34	1029	-	-
	Tpr4g3328	1177	Gene3D	Ribonuclease Inhibitor	552	724	IPR032675	-
	Tpr4g3328	1177	Gene3D	Ribonuclease Inhibitor	725	914	IPR032675	-
	Tpr4g3328	1177	SMART	till_3	14	155	IPR000157	GO:0007165
	Tpr4g3328	1177	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	185	448	IPR027417	-
	Tpr4g3328	1177	Pfam	TIR domain	15	179	IPR000157	GO:0007165
	Tpr4g3328	1177	Coils	Coil	1128	1148	-	-
	Tpr4g3328	1177	Pfam	NB-ARC domain	197	438	IPR002182	GO:0043531
	Tpr4g3328	1177	SUPERFAMILY	L domain-like	491	889	-	-
	Tpr4g3328	1177	ProSiteProfiles	TIR domain profile.	13	180	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr4g3328	Tpr-Chr4	39238363	39279810	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr4g3328	6	792	WRKY Transcription Factor Family	AT4G12020	29.877	9.01e-82	293

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr4g3328	-		-	mtr:MTR_5g090940	1366.29