Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3325 ATGGCAATTTATGAACAACAGTCAAGTGTTGTTCTGTTCTTTTGGTCTTTGTTTTGTTCTGTTGTTTTGATTTTTCTCAGTGTAGTTATACTTCTCGTTATATTTTATACTATATTTTATACGGTTATAGATTTCTATGCCGATCAAGAAAAAGTAAAGTCAGATCTTTGCGATCCTGCAAATTATGAAGAACAATCGGATCGTTTTACCCATGATGTTTTCATCAGTTTTAGAGGGGAAGACACGCGGTACATTTTTATCGGATATCTTTGCGAAGAGTTTCGAAAGAGGGGAATCAATGTTTTCTATGATGATACAAATCTGGAATTAGGGGAAGATATTTCACCTGCACTTTGCAAAGCCATAAAAGAATCCAAGATCTTAGTTATTGTTTTTTCTGAGAATTATGCATATTCCAGGTGGTGTCTTGATGAACTCGCCAAGATTAGGGAATGTACAAAAAGAAACAATAAACAAATTGCTTTTCCGATTTTTTACCATGTTGAACCATCGGATGTACGACATCAAAGAAAGAGCTATGGAGAAGCCATGGCTGCTCATAAGAAGAGGTTTGGAAAAAGCTCAGAAAAAATAAAAGCATGGACAGCAGCATTGTCTGAAGTGGCAGACTTTAAAGGTCATTCCATCCACACCGGATTCGAAATCGATCATGTTAAAGAGATTGCCGAAAGGGTCCATGCTAAGATACCTCCTATATCTCTACTTGCTCAAAATGCAGTTGGACTTAATCAACGCATAGAAGAGACGAAGTCACTTCTAGACTTGAAGCCAAATGACAATATTGTATGCATGTTGGGCATATATGGACCACGTGGAATAGGGAAAACAAATCTTGCAAAATTATTGTATAACAACATTGCGCACGACTTTAAAGCTGCATGTTTTATTGCCAATGTTACAGAGAAATCAAAAAATATCAATGGCTTAGAAGATCTACAAGTCACACTTTTATCAGAGATGTTTGAGAAGACAAATTCTAAGTTGGGGAGTACAAGTAGAGGAATCAACGAAATAAAACACAAACTTAGAAGGAAGAAAGTTCTTCTGGTTCTTGATGATGTTAATGAGCTGGTACAATTAGAAAACTTGGCAGGAGGAAGTGATTGGTTTGGTCCAGGTAGTAGGATCATTATAACAACAAGGGACAAAGGTTTGCTCATGGGTACTCATCAAATATTAGTTAAGACTTATGAAATGAAGGAACTTACGGATCAAGAAATAGAGAGTCAGTTAAACGATTATATAAAAAGAAAATAG 1278 0.3592 MAIYEQQSSVVLFFWSLFCSVVLIFLSVVILLVIFYTIFYTVIDFYADQEKVKSDLCDPANYEEQSDRFTHDVFISFRGEDTRYIFIGYLCEEFRKRGINVFYDDTNLELGEDISPALCKAIKESKILVIVFSENYAYSRWCLDELAKIRECTKRNNKQIAFPIFYHVEPSDVRHQRKSYGEAMAAHKKRFGKSSEKIKAWTAALSEVADFKGHSIHTGFEIDHVKEIAERVHAKIPPISLLAQNAVGLNQRIEETKSLLDLKPNDNIVCMLGIYGPRGIGKTNLAKLLYNNIAHDFKAACFIANVTEKSKNINGLEDLQVTLLSEMFEKTNSKLGSTSRGINEIKHKLRRKKVLLVLDDVNELVQLENLAGGSDWFGPGSRIIITTRDKGLLMGTHQILVKTYEMKELTDQEIESQLNDYIKRK* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3325 425 Gene3D - 234 401 IPR027417 -
Tpr4g3325 425 PRINTS Disease resistance protein signature 271 286 - -
Tpr4g3325 425 PRINTS Disease resistance protein signature 348 362 - -
Tpr4g3325 425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 422 IPR027417 -
Tpr4g3325 425 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 65 401 IPR044974 GO:0006952
Tpr4g3325 425 SUPERFAMILY Toll/Interleukin receptor TIR domain 63 213 IPR035897 -
Tpr4g3325 425 SMART till_3 70 211 IPR000157 GO:0007165
Tpr4g3325 425 CDD AAA 247 389 - -
Tpr4g3325 425 Pfam NB-ARC domain 265 410 IPR002182 GO:0043531
Tpr4g3325 425 Gene3D - 70 233 IPR035897 -
Tpr4g3325 425 ProSiteProfiles TIR domain profile. 69 236 IPR000157 GO:0007165
Tpr4g3325 425 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 65 401 - -
Tpr4g3325 425 Pfam TIR domain 71 232 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3325 Tpr-Chr4 39204831 39218627 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3325 62 409 WRKY Transcription Factor Family AT4G12020 27.273 5.33e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3325 - - mtr:MTR_5g090940 438.343