Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3316 ATGGTCGGCTATAAGTTTCACCAGTATCAAATTGTTGGAAGAGCTCTTCCTACTGAAAAAGATGAACATCCGAAGATTTATCGCATGAAACTTTGGGCAACCAATGAAGTTCGTGCCAAATCTAAGTACTGGTATTTCTTGAGGAAGATTAAGAAGGTTAAGAAAAGCAATGGACAAGTTTTGGCTATCAATGAGATCTTTGAGAAGAACCCCACCAAAATTAAGAACTTTGGAATTTGGTTGAGATACCAGAGTCGTACTGGTTATCACAACATGTACAAGGAATACCGTGATACTACTCTCAATGGTGCTGTGGAGACAATGTACAACGAAATGGCGTCTCGTCATAGGGTCAGGTTTCCATGCATCCAAATCATTAAGACCGCCACCATCCCAGCCAATCTTTGCAAGAGGGAGAGCACTAAGCAGTTCCACAATTCCAAAATCAAGTTCCCCTTGGTGTTCAAGAAGATTAGGCCACCAACTAGGAGCCTGAAAACAACATACAAAGCAAACAAGCCCAACCTGTTTATGTGA 537 0.4153 MVGYKFHQYQIVGRALPTEKDEHPKIYRMKLWATNEVRAKSKYWYFLRKIKKVKKSNGQVLAINEIFEKNPTKIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVETMYNEMASRHRVRFPCIQIIKTATIPANLCKRESTKQFHNSKIKFPLVFKKIRPPTRSLKTTYKANKPNLFM* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3316 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 137 - -
Tpr4g3316 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 138 178 - -
Tpr4g3316 178 Gene3D - 1 71 - -
Tpr4g3316 178 Hamap 50S ribosomal protein L18Ae [rpl18a]. 6 69 IPR028877 -
Tpr4g3316 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 137 IPR028877 -
Tpr4g3316 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 138 178 IPR028877 -
Tpr4g3316 178 Gene3D - 72 147 - -
Tpr4g3316 178 PIRSF Ribosomal_L18a 2 178 IPR021138 GO:0003735|GO:0005840|GO:0006412
Tpr4g3316 178 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 7 128 IPR023573 GO:0003735|GO:0005840|GO:0006412
Tpr4g3316 178 SUPERFAMILY RplX-like 71 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3316 Tpr-Chr4 39115402 39117628 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3316 1 178 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 88.764 6.97e-122 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3316 K02882 K22683 jre:109014971 348.591